Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0847 ATGAACGATGTGAGAGGTCAAGAACAAATTCCTGAATTAGATTTTGGAAAATTGGAAGTGGTGACGGCGCTCGGCCGGGGAGCGAAGGGAGTCGTGTTCTTGGCTCGAAATGCGGCAGGGGATGACGACGGCGAATGGTTGGCCTTGAAGGTGATTTCCAGAGAATTAATCGAGAGGAAGGCCAAGATTGTGAATAGCGATGGAGCTGAGTATCGCAGAGTTTGCTTTGAACGAGAAGTTTTGCGGCTTTTTCGGCATCCGCTTTTGCCTCGATTGCGAGGAGTTTTGAATACTCAGAAAGTTGTAGGTTACGCCATTGATTATTGTAATGGACGAGATCTTAATACTCTCAGGAAAAAACAGACCGAAAAAATGTTCTCCGACGACGTTATTAGATTTTACGCTGCGGAATTAGTTATGGCGTTGGAGTATGTACACAGTCTAGGAATAGTTTACAGAGATTTGAAGCCGGAGAATGTTATGGTTCAACACAGCGGCCATATAATGCTTGTGGATTTTGATCTCTCTACCAGACTCTCTCAAAAATCTCCGAAATCGTCTCCGTCTCCGTCGCCGTCGCCATCGCCATCGCCGGCGGTAGAGGTTTTGGCGGAGTCTAAATTCGCGATGAATGAAAAGATTAACAAGAAAAAGAACAAGAAGCGATTCTTTCATTTTCACCGGTTCTGCAACTCCGGCGTATCACCGGAGGAATCCGAACATCAGGCTACGGCCGCGGAGAAACCAAGATCGCAGCCGGAGTCGCCGGATTCGGAGTCGTCGGAGAAGTCGAACTCGTTCGTGGGAACAGAGGACTACGTGGCACCGGAAATCGTTGCCGGGAAGGGTCATGACTTCGCCGTGGACTGGTGGTCACTCGGCGTAGTTCTGTACGAGATGCTGTACGGAACGACGCCATTTAGGGGCTCGAATCGGAAGGAAACATTCTACCGGATTCTAACGAAAACGCCGGATCTGTGCGGCGAAGCGACGGCGTTAAGGGATTTGATCAGGAAGTTGCTGGAGAAAGATCCGAAGAAGAGAATCGAACTGGAGGAAATCAAGGGCCACGATTTCTTTAAAGGGACTGACTGGGATTTAGTTCTGGAAATGCCCCGGCCGCCGTCGCTACCTGAAATGGCGGAAGAGGACATAAATGGAAATAACTTAATTGATGTGGAGTCTTTTGTACAAGACGTATTTTGCAGAGAAATGGAGAAGAAGAATCAAATTAACGGTGATGAAGGAAAAGGGTTAATTCCTAATTACACGGACTCTGACACATTTCATGTATTCTAA 1299 47.58 MNDVRGQEQIPELDFGKLEVVTALGRGAKGVVFLARNAAGDDDGEWLALKVISRELIERKAKIVNSDGAEYRRVCFEREVLRLFRHPLLPRLRGVLNTQKVVGYAIDYCNGRDLNTLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMVQHSGHIMLVDFDLSTRLSQKSPKSSPSPSPSPSPSPAVEVLAESKFAMNEKINKKKNKKRFFHFHRFCNSGVSPEESEHQATAAEKPRSQPESPDSESSEKSNSFVGTEDYVAPEIVAGKGHDFAVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKTPDLCGEATALRDLIRKLLEKDPKKRIELEEIKGHDFFKGTDWDLVLEMPRPPSLPEMAEEDINGNNLIDVESFVQDVFCREMEKKNQINGDEGKGLIPNYTDSDTFHVF 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7872016 7873411 + ClG42_09g0084700.10 Clacu09g0847 257155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0847 432 MobiDBLite consensus disorder prediction 241 257 - -
Clacu09g0847 432 FunFam Serine/threonine-protein kinase OXI1 262 379 - -
Clacu09g0847 432 ProSiteProfiles Protein kinase domain profile. 18 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0847 432 Gene3D Transferase(Phosphotransferase) domain 1 113 183 - -
Clacu09g0847 432 Gene3D Transferase(Phosphotransferase) domain 1 260 379 - -
Clacu09g0847 432 SMART serkin_6 18 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0847 432 Gene3D Phosphorylase Kinase; domain 1 18 112 - -
Clacu09g0847 432 Pfam Protein kinase domain 259 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0847 432 Pfam Protein kinase domain 19 187 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0847 432 FunFam Serine/threonine-protein kinase OXI1 113 181 - -
Clacu09g0847 432 MobiDBLite consensus disorder prediction 179 200 - -
Clacu09g0847 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0847 432 MobiDBLite consensus disorder prediction 234 267 - -
Clacu09g0847 432 PANTHER FLIPPASE KINASE 1-RELATED 9 383 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu09g0847 432 SUPERFAMILY Protein kinase-like (PK-like) 16 386 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2382 Clacu-Chr2:36853539 Clacu09g0847 Clacu-Chr9:7872016 2.80E-77 dispersed
Clacu09g0847 Clacu-Chr9:7872016 Clacu10g1374 Clacu-Chr10:26810597 6.50E-53 dispersed
Clacu09g0847 Clacu-Chr9:7872016 Clacu04g1038 Clacu-Chr4:24662095 6.70E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73820 PF00069 Pkinase 4.80E-30 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0847 K20714 - csv:101223223 664.455