Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0865 ATGGAAAACACTAAACTTTCATTACCTCTCTTTGCTGCTTTACTCCTCACAAATGCTATTGTTGTTTTAGCCAATTCCAATGAGAATAGTGACATGAATAATAACTCGAGTGTCATAGAAAACTCATGTGCCATTACTCTTTATCCTCAACTATGTCAATCAACAATATACTCCATCGTCGGAACATCCAACTTGTTGAGTTTGAAAGATATTGTTGAAGTGTCATTGAGTGTTGCTGTTGATGCAGCTAAGCATAACTACAAAAGCATCAACAAACTTTGGATGTCACTTAATGATGTTAGTAAACGAGACAAGATTGCGCTTCGTGATTGTGTGGAAACCACAGACAGGGCGATTTATGAACTTCACAAGGCCGTAGAGGATCTTCGTGAGTATCCCAACAAGAAATCTCTTACCTTGTACGCTGATGACCTCAAAACCTTTCTCAGTTCTGCCATTACTAATCAGGAGACTTGTTTGGAGGGATTGTCACATGAGAAAAGGGTGTTGAAGCTGATTGAAAGCACACATATTCACGTCACAAAGTTGTGTAGTAATACATTGGCTTTGGTTAAGAAATTGACACACACTCATTTTACAAATCAAAAAACCAATAAAATAACCTCTGACCACCCCACAATTGTTCTCTTTTCCCACCCTGTCGATCAGGAGGAAGGTGAGAATAGAGGAATTAGGGAGGATTTAGAAGACGGAATAAAGTGGCCAAAATGGATGGCGAGCCGTGACCGGAGGCTTTTGGAGTCATCGTACGAAGCTACGGCGGACGTGGTGGTGGCGGCGGATGGAAGTGGAAATTATAAAACGGTGTCGGAGGCGGTGGCGGCGGCGCCGAGTAAGAGCAGCAAAAGATATGTAATAAGAATAAAGGGTGGAGTTTACAAGGAAAATGTTGATGTGCCAAGTAGTAAAACCAATATTATGTTTTGGGGAGATGGAAGATCCAACACCATTATCACTGCTAGCAGAAGTGTTGGGGGTGGCAGTACAACCTTCAATTCCGCCACAGTTGCTGCTGTGGGGGATGGATTTTTAGCTCGGGATATAACCTTTCAAAACACAGCAGGAGCAGCCAATGACCAAGCTGTAGCTCTCCGCGTTGGGTCAGATCGCTCAGCCTTCTACCGTTGTGGCATGCTAGCCTACCAAGACACTCTCTACGTCCATTCAAACCGTCAGTTCTTCGTCAACTGCGTCGTTGCAGGCACAGTCGATTTCATCTTCGGAAACGCAGCAGTCGTATTCCAAAACTCCGACCTCACCCCTCGCAAACCAGGCCCTAAGCAACAGAACATGGTCACAGCACAAGGAAGAACTGACCCGAATCAAAACACGGGAATCGTGATCCAAAAGTGTAAAATAAAAGCGACGTCGGACTTGGAGCCGGTGATAAAAGAATTCCCAAGCTTCCTTGGGAGGCCATGGAAGGATTATGCTAGGGTTGTGGTAATGCAAACGGACATAACCAATGTGATAGACTCAAAAGGGTGGGCGCCATGGGGTAGTGAAATAAAGAAACCCTACTTTGCGGAATATGATAATAATGGAGCTGGAGCCAATACTTGTTGTAGAGTGACATGGTCTACAATTATTAATGCAGCTCAAGCTAAGACCTTTACGGCTGAACCATTCATAGATGGTGCTAATTGGCTCCCATCCACTGGCTTCCCCTATCAGCTTGGCCTCTAA 1707 44.46 MENTKLSLPLFAALLLTNAIVVLANSNENSDMNNNSSVIENSCAITLYPQLCQSTIYSIVGTSNLLSLKDIVEVSLSVAVDAAKHNYKSINKLWMSLNDVSKRDKIALRDCVETTDRAIYELHKAVEDLREYPNKKSLTLYADDLKTFLSSAITNQETCLEGLSHEKRVLKLIESTHIHVTKLCSNTLALVKKLTHTHFTNQKTNKITSDHPTIVLFSHPVDQEEGENRGIREDLEDGIKWPKWMASRDRRLLESSYEATADVVVAADGSGNYKTVSEAVAAAPSKSSKRYVIRIKGGVYKENVDVPSSKTNIMFWGDGRSNTIITASRSVGGGSTTFNSATVAAVGDGFLARDITFQNTAGAANDQAVALRVGSDRSAFYRCGMLAYQDTLYVHSNRQFFVNCVVAGTVDFIFGNAAVVFQNSDLTPRKPGPKQQNMVTAQGRTDPNQNTGIVIQKCKIKATSDLEPVIKEFPSFLGRPWKDYARVVVMQTDITNVIDSKGWAPWGSEIKKPYFAEYDNNGAGANTCCRVTWSTIINAAQAKTFTAEPFIDGANWLPSTGFPYQLGL 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8047339 8052519 + ClG42_09g0086500.10 Clacu09g0865 257173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0865 568 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Clacu09g0865 568 FunFam Pectinesterase 35 195 - -
Clacu09g0865 568 NCBIfam pectinesterase inhibitor domain 11 195 IPR006501 GO:0004857(InterPro)
Clacu09g0865 568 SMART PMEI_2 34 190 IPR006501 GO:0004857(InterPro)
Clacu09g0865 568 MobiDBLite consensus disorder prediction 426 446 - -
Clacu09g0865 568 Pfam Plant invertase/pectin methylesterase inhibitor 38 190 IPR006501 GO:0004857(InterPro)
Clacu09g0865 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 195 IPR035513 -
Clacu09g0865 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 196 IPR035513 -
Clacu09g0865 568 SUPERFAMILY Pectin lyase-like 259 567 IPR011050 -
Clacu09g0865 568 CDD PMEI-like_3 42 195 - -
Clacu09g0865 568 Gene3D - 256 568 IPR012334 -
Clacu09g0865 568 PANTHER PECTINESTERASE 13 559 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu09g0865 568 FunFam Pectinesterase 256 568 - -
Clacu09g0865 568 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Clacu09g0865 568 Pfam Pectinesterase 262 553 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0146 Clacu-Chr9:1364958 Clacu09g0865 Clacu-Chr9:8047339 1.10E-172 dispersed
Clacu09g0865 Clacu-Chr9:8047339 Clacu11g0163 Clacu-Chr11:1305609 9.30E-92 dispersed
Clacu09g0865 Clacu-Chr9:8047339 Clacu07g1434 Clacu-Chr7:29053467 1.60E-179 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0865 K01051 - csv:101221055 847.425