Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0894 ATGGAACTTCATCTCTTGTGGGTTGGCATCTTCCTTTGCTCTGGATTTTGGTCTCTTGCGTTAAGTGATCAAGATGGTTTCCTAAGCTTATCTTGTGGAGCAACTACCACCTTCACTGACTCCTCCAACATTTTATGGATTCCAGACGTCGACTACATCAGCTCCGGTAACGTGTCAATCATCGACAATAACCATGTTCGAATCTTCCCCGACCCCCGAGCGCGAAATTGTTACAAGCTACCACTTAAAAATAGCTCCTCATCAGTTCTCATCAGAGCTGAGTTTGTGTATAAAAACTATGACAAGCTTGGGAAGCCCCCTGCATTCTTTGTTTCTCTTGGGACTGCCATGACTAGCAATGTGAACCTTACTTTTCATGACCCTTGGACTGAGGAGTTTGTATGGCCAGTTAACAAAGAAACTGTCTCCTTTTGTTTACATTCCATTCCTCAAGGTGGCAGCCCTTTGATATCTTCGATCGAACTCCGGCCGCTACCGCGAGGAGCGTACGAAGATGATGGCTTGCTTCAGAGTCAGGCTCTTAGAAAGTCGTATCGAATCAATTGTGGTTATACTAATGGATCTCTCAGGTACCCGATCGATCCATACGACCGAATATGGGACGCTGACCGCAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGCCAACTTTGATATGATAGGAGTGAAGGAAGCTCCACCAGGGGCAATTGTTGAAACAGCAAGAGTTTTGACAAGAAGAGATGAGCTAAGCTACAACCTTCCACTTGAAGAGGAAGAAGGAGATTACTATGTGATTCTTTATTTTGGTGGGATTCTTGCTGTTCATCCTTCATTTGATGTATTGATCAATGGGAGAGTTATAGAATCAAACTACACTTTTGAAAAGGGAGAGATGAGGGCTTTGTATGTCATTCAATACCAAATCAAGACCTTGAATATCACTCTCAAGAGTGTTAAATTCTATCCTCAAATCAATGCTATTGAGGTCTATCAGATTGTTCATATTCCTTTGGAAGCTTCATCAACTACAGTTTCAGCCCTTCAGGTGATTCATCAATCTACTGGTTTGAATTTGGGATGGGAAGATGATCCATGTTCCCCAACAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTTACATCTCTAGAGCTTTCCAACATCAACTTGAGGTCGATCGGCCCGACGTTTGGCGACATTCTCTATCTCAAAATACTGGATTTGCACAACACTTCACTTTCAGGAGAAATACAAAATTTGGGCAGTCTCACTCATCTTCAAAATTTGAACTTGAGTTTCAACAAGCTAACATCATTTGGGTCAGATTTGGAGAACCTTAGCAACCTCAAAATTCTGGACTTGCAGAACAATAGTCTGCAGGGAATTGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCAATTATTGAATTTGGAGAACAATAGGCTGGAAGGCACCCTCCCATTGTCTTTGAACAAAGGAAGTCTGGAAATTAGAACAATAGGAAACCCTTGTCTGTCATTCTCCACAATGACATGCAATGATGTATCATCAAATCCAGCCATTGAAACACCACAAGTGACAGTTGTTCCTGAGAAGAAGGGGATGAGCAGCAGCCATAATAATACTAACAATCATTTGCCTATCATAATTATTGTTTCTGCAGTTGCTTCAGCTTTGCTACTTCTCATCACTCTCTCCCTTTCACTTCTACTCTACCTGAGAAACCAATCTCAACTCACAACAACTCAACTCACATACTCAACAAAAGCAGCAATGGAGCTAAGGAATTGGAACTCAGCAAGAGTATTCACGTACAAGGAGATAAAGTCAGCTACGAACAACTTCAAGGAAGTGATTGGAAGAGGAAGCTTTGGATCAGTTTATCTTGGAAAGCTTCCGGATGGAAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAACCCAACTTGGGACTGACTCCTTTATCAATGAGGTTCACCTTTTGTCTCAAATTCGCCATCAAAATCTTGTTTGTTTGGAAGGATTTTGTAACGAATCCAAACGACAAATACTTGTTTATGAGTATTTACCTGGTGGATCATTGGCTGACCACATATATGGCATGAACAAAAAAAGTGTTTCTCTCAGTTGGATTAGAAGACTCAAAGTTGCTGTTGATGCAGCAAAAGGGTTGGACTACTTACACAATGGAAGTGAGCCAAGAATAATCCACAGAGATGTGAAGTGTAGTAACATTCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGCCTTTCCAAGCAAATTTCACATCCTGATGCAACTCATGTCACCACTGTTGTCAAGGGCACTGCTGGTTATTTGGATCCTGAGTATTATTCCACTCAACAGTTAACTGAAAAGAGCGACGTGTATAGTTTTGGAGTTGTGTTATTGGAGCTTATTTGTGGAAGAGAGCCTTTGAGTCGCACAGGAAATCCAGATTCTTTCAACTTGGTGCTATGGGCAAAACCCTACTTACAAGCAGGTGCATTTGAGGTAGTAGATGAAAATTTGAGAGGAAGGTTTGATGTTGAAAGTATGAAAAAGGCAGCTATTGTTGCTATAAGGTGTGTGGAAAGAGATGCTTCTCAAAGGCCTAATATTGCACAAGTTTTGGCAGACCTACGAGATGCTTATGATGCACAGATTGCATATCTTTCTACTTTTCACCATTGA 2721 41.27 MELHLLWVGIFLCSGFWSLALSDQDGFLSLSCGATTTFTDSSNILWIPDVDYISSGNVSIIDNNHVRIFPDPRARNCYKLPLKNSSSSVLIRAEFVYKNYDKLGKPPAFFVSLGTAMTSNVNLTFHDPWTEEFVWPVNKETVSFCLHSIPQGGSPLISSIELRPLPRGAYEDDGLLQSQALRKSYRINCGYTNGSLRYPIDPYDRIWDADRNFKPFHVSSGFKVEANFDMIGVKEAPPGAIVETARVLTRRDELSYNLPLEEEEGDYYVILYFGGILAVHPSFDVLINGRVIESNYTFEKGEMRALYVIQYQIKTLNITLKSVKFYPQINAIEVYQIVHIPLEASSTTVSALQVIHQSTGLNLGWEDDPCSPTTWDHVGCEGNLVTSLELSNINLRSIGPTFGDILYLKILDLHNTSLSGEIQNLGSLTHLQNLNLSFNKLTSFGSDLENLSNLKILDLQNNSLQGIVPDSLGELEDLQLLNLENNRLEGTLPLSLNKGSLEIRTIGNPCLSFSTMTCNDVSSNPAIETPQVTVVPEKKGMSSSHNNTNNHLPIIIIVSAVASALLLLITLSLSLLLYLRNQSQLTTTQLTYSTKAAMELRNWNSARVFTYKEIKSATNNFKEVIGRGSFGSVYLGKLPDGKLVAVKVRFDKTQLGTDSFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGMNKKSVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQISHPDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSRTGNPDSFNLVLWAKPYLQAGAFEVVDENLRGRFDVESMKKAAIVAIRCVERDASQRPNIAQVLADLRDAYDAQIAYLSTFHH 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8314231 8325151 - ClG42_09g0089400.10 Clacu09g0894 257202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0894 906 CDD STKc_IRAK 625 890 - -
Clacu09g0894 906 Pfam Malectin-like domain 30 337 IPR024788 -
Clacu09g0894 906 SUPERFAMILY Protein kinase-like (PK-like) 601 890 IPR011009 -
Clacu09g0894 906 SMART LRR_typ_2 451 474 IPR003591 -
Clacu09g0894 906 SMART LRR_typ_2 475 499 IPR003591 -
Clacu09g0894 906 SMART LRR_typ_2 428 450 IPR003591 -
Clacu09g0894 906 Gene3D Ribonuclease Inhibitor 348 531 IPR032675 -
Clacu09g0894 906 Pfam Leucine rich repeat 430 488 IPR001611 GO:0005515(InterPro)
Clacu09g0894 906 ProSiteProfiles Protein kinase domain profile. 619 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0894 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 741 753 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0894 906 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524(InterPro)
Clacu09g0894 906 FunFam serine/threonine-protein kinase PBS1-like 588 694 - -
Clacu09g0894 906 Gene3D Transferase(Phosphotransferase) domain 1 695 902 - -
Clacu09g0894 906 ProSiteProfiles Leucine-rich repeat profile. 430 452 IPR001611 GO:0005515(InterPro)
Clacu09g0894 906 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 695 900 - -
Clacu09g0894 906 SUPERFAMILY L domain-like 350 498 - -
Clacu09g0894 906 Gene3D - 182 338 - -
Clacu09g0894 906 SMART serkin_6 619 894 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0894 906 Gene3D Phosphorylase Kinase; domain 1 592 694 - -
Clacu09g0894 906 PANTHER OS07G0107800 PROTEIN-RELATED 447 893 - -
Clacu09g0894 906 Pfam Protein kinase domain 621 888 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0894 Clacu-Chr9:8314231 Clacu11g1854 Clacu-Chr11:29679714 6.50E-79 dispersed
Clacu09g0894 Clacu-Chr9:8314231 Clacu09g0899 Clacu-Chr9:8379528 8.50E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73821 PF12819 Malectin_like 9.40E-52 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0894 - - - 0.0