Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0899 ATGAGTTGCTTTCCATGTTTTTCATCTCATGGGAAAGCAGCAAGAAGAACAAAGAGTGGTAGAAAGGAACAGTCTGTTTCGTCGCATTCTCGTAGTCATAAACAACAACAACAACCGCCGCCGCCGCAACAACAACATCATCCGGCTCCTCCTCCTCCACGTCCTACGCCTACAGACATTCCAAAGGGAAATCAGGTTCAAAAGGAAGCAGAGAAAGAGAAAGAGAAAGAGAATGAGATTATTGGGGAAAAGAATAACATTGCAGCACAAACCTTCACCTTCAGAGAATTGGCCACTGCTACAAAGAATTTCCGTCAAGAATGTCTCATTGGTGAAGGAGGGTTTGGGAGAGTTTACAAAGGAAAACTCGATAAAACTAATCAGGTTGTAGCAGTGAAGCAGCTTGACAGAAATGGATTGCAAGGGAACAGAGAGTTTCTTGTGGAAGTTTTGATGCTAAGCCTTTTACACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTGTTGGTCTATGAGTACATGCCTTTAGGATCTCTGGAAGATCATCTACTTGATCTTCCATATGGAAGGAAGGCATTGGATTGGGGAACAAGGATGAAAGTAGGGTTGGGAGCAGCAAAAGGGCTAGAATACTTGCATAACAAAGCCAACCCACCAGTGATATATAGAGACTTGAAATCATCAAACATACTATTGGACGGTGATTACAATGCAAAGCTGTCAGATTTTGGACTTGCAAAGCTTGGTCCTGTTGGAGACAAGTCCCATGTTTCCTCCAGAGTTATGGGAACCTATGGATATTGTGCTCCTGAGTATCAAAGAACTGGTCAACTTACTCTCAAATCTGATGTCTATAGCTTTGGCGTCGTTTTGTTGGAACTCATCACTGGCAAGAGAGTCATCGACAACACTCGTCCAGCTAAACAACAAAATTTGGTCACTTGGGCATGCCCAATATTCAAGGAACCAGCTAGATTCAAGGAGTTGGCAGATCCTCTTCTTGGTGGAGACTTTCCTATAAGGGCTCTGAACCAAGCGATCGCGGTCGCCGCCATGTGCCTCCATGAGGAAGCGACGACCCGACCGTTGATGTGCGACGTTGTCACTGCTCTCAGCTTCTTAGGAGCAGAAGCCACACAGTCGTCGAGGTCTTCGTCGTTAGGTGATGTCCCATCACCCGTTGATGATTCCAATTTGATGAATCTATCCAAACCCATCGACTATCTTCACAATGACGAAACAGCTGAGGCACGCCAACGAGCGGTCGCCGAGGCCATGGAATGGGGTTCGTCCTCCAAGCAAAATGCTGCAGCTTCGCGCCCGGGAAGTTCTTCTTCCTTGTAA 1365 45.86 MSCFPCFSSHGKAARRTKSGRKEQSVSSHSRSHKQQQQPPPPQQQHHPAPPPPRPTPTDIPKGNQVQKEAEKEKEKENEIIGEKNNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGKLDKTNQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPYGRKALDWGTRMKVGLGAAKGLEYLHNKANPPVIYRDLKSSNILLDGDYNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTLKSDVYSFGVVLLELITGKRVIDNTRPAKQQNLVTWACPIFKEPARFKELADPLLGGDFPIRALNQAIAVAAMCLHEEATTRPLMCDVVTALSFLGAEATQSSRSSSLGDVPSPVDDSNLMNLSKPIDYLHNDETAEARQRAVAEAMEWGSSSKQNAAASRPGSSSSL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8379528 8382898 - ClG42_09g0089900.10 Clacu09g0899 257207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0899 454 PANTHER OS07G0668900 PROTEIN 37 390 - -
Clacu09g0899 454 FunFam Serine/threonine-protein kinase PBS1 181 394 - -
Clacu09g0899 454 MobiDBLite consensus disorder prediction 420 454 - -
Clacu09g0899 454 Gene3D Transferase(Phosphotransferase) domain 1 181 396 - -
Clacu09g0899 454 MobiDBLite consensus disorder prediction 65 82 - -
Clacu09g0899 454 SMART serkin_6 104 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0899 454 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524(InterPro)
Clacu09g0899 454 MobiDBLite consensus disorder prediction 41 59 - -
Clacu09g0899 454 CDD STKc_IRAK 110 378 - -
Clacu09g0899 454 Pfam Protein kinase domain 106 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0899 454 ProSiteProfiles Protein kinase domain profile. 104 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0899 454 FunFam Serine/threonine-protein kinase PBS1 72 180 - -
Clacu09g0899 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0899 454 Gene3D Phosphorylase Kinase; domain 1 62 180 - -
Clacu09g0899 454 SUPERFAMILY Protein kinase-like (PK-like) 90 387 IPR011009 -
Clacu09g0899 454 MobiDBLite consensus disorder prediction 435 454 - -
Clacu09g0899 454 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1114 Clacu-Chr3:20915304 Clacu09g0899 Clacu-Chr9:8379528 2.50E-121 dispersed
Clacu09g0899 Clacu-Chr9:8379528 Clacu10g2037 Clacu-Chr10:33832738 1.40E-130 dispersed
Clacu09g0894 Clacu-Chr9:8314231 Clacu09g0899 Clacu-Chr9:8379528 8.50E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73822 PF00069 Pkinase 4.30E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0899 - - - 0.0