Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0913 ATGGCGATTCTGAAGCTTTTTTCTCTCTGCATTTTCTTCTTCTTATTGATCAGACCCCCTGTACGATGTGATTCCTTACATTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTTTGATGTTCAGCTTCTTTTGGGAAAGATCAGAGCTTCACTTGAAGGAGACACTCAAAACTTGCTTTTGTCTTCATGGAATTACTCTCTGCCTCTTTGTCAATGGAGGGGACTCAAATGGGTCTTCTCTACTGGAACTCCACTGGTCTGCAGTGATTCTTCTTCTCCACAGTGGTCTAATCTCACTCTTTTCAAAGACCCTTCTCTTCATGTTCTCTCTTTGCAACTTCCATCTGCTAATCTCACTGGTTCGTTGCCCAAGGAGCTTGGTGAGTTCACTATGCTCCAAAGCCTCTATCTAAGTATAAACTCTTTGACTGGAACCATTCCACTTGAACTTGGTTACAGCTCCTCTCTTTCTGACATTGATTTGAGTAGCAATCTTTTGACTGGAGCTCTTCCACCCTCGATCTGGAATCTGTGTGAGAAACTTGTTTCTGTCAGACTACATGGCAATTCATTATCTGGGTCACTGCCGGAGCCGGCTTTACCAAACTCCACCTGCAAGAATTTGGAAGCTTTGGATTTGGGCAACAATCAGATTTCAGGTACTTTCCCAGAATTCATTACTAGATTTCAGGGTCTGAAAGAGCTTGATCTTGGGAAAAATTTGTTGTCTGGACAAATCCCTCAGAGCTTAGGCCAGTTAGAGCTGGAGAAGTTGAACCTTTCAAACAACAATTTCAGTGGAATATTGCCTGTTTTTAGTAACTCAAAGTTTGGTGTTGAGGCTTTTGAAGGGAATAGTCCTGGGCTTTGTGGGGAGCCTTTGAAAAGCTGTGCAGGACCTTCTCATTTGAGTTCAGGTGCCATTGCTGGCCTTGTTATCGGCTTGATGACTGGGACGGTGGTTTTAGCTTCGTTGCTTATTGGCTATATGCAAAACAAGAAGAAGAAGAGTATGAGTGAGAGTGAAGATGAGATTGACGAAGGAGAAGATGAAGAGAATGGTGGCAGTATCGGTGCAGGCGGTGAAGGAAAGCTCATTTTGTTTCAGGGTGGTGAGCATCTGACATTGGATGATGTCTTGAATGCTACAGGGCAAGTTATGGAAAAAACAAGCTATGGCACTATATATAAGGCGAAGCTTGCTGATGGAGGCACCATTGCTCTGAGATTGCTGAGGGAAGGTAGTTGCAAAGACAGAAATTCTTGTTTGTCTGTGATTAAACAGTTGGGAAAGATTCGCCACGAGAACTTGATTCCTTTGAGAGCTTTCTATCAGGGAAAGAGAGGAGAGAAGCTCCTTATTTATGACTATCTGCCTATCAGAACTTTACATGATTTTCTACATGAATCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTAGGAGGCACAAGATTGCCTTAGGCATCGCCCGAGGACTAGCGCATCTTCACACAGGTCTTGAAGTGCCCATTACACATGGCAACGTTAGATCAAAAAATGTGCTTGTGGATGACTTCTTTGCAGCGAGACTGACGGAGTTTGGGCTCGACAAGCTAATGATCCCATCGGTAGCTGACGAAATCGTCTCGCTTGCAAAATCAGATGGGTACAAGGCACCGGAGCTGCAACGGATGAAGAAATGCAATTCGAGAACAGATGTGTATGCATTTGGAATCTTGCTATTGGAAATTCTGATTGGGAAGAAACCGGGAAAAAGTGGAAGAAATGGAGAGTTTGTGGATCTGCCATCAATGGTGAAAGTCGCAGTTTTAGAGGAAACAACAATGGAGGTTTTCGATGTGGAGGTTTTGAAAGGGATTAGAAGTCCCATGGAAGATGGAATTGTTCAAGCATTGAAGCTTGCAATGGGCTGCTGTGCTCCAGTGGCTTCAGTAAGACCCTCCATGGATGAAGTTGTGAAGCAGTTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGCCCAACAGAAACAAGAAGTGAGATTGGTACCCCATTTTGA 2070 43.57 MAILKLFSLCIFFFLLIRPPVRCDSLHFLSSSSSSSSSSSSSSFSFDVQLLLGKIRASLEGDTQNLLLSSWNYSLPLCQWRGLKWVFSTGTPLVCSDSSSPQWSNLTLFKDPSLHVLSLQLPSANLTGSLPKELGEFTMLQSLYLSINSLTGTIPLELGYSSSLSDIDLSSNLLTGALPPSIWNLCEKLVSVRLHGNSLSGSLPEPALPNSTCKNLEALDLGNNQISGTFPEFITRFQGLKELDLGKNLLSGQIPQSLGQLELEKLNLSNNNFSGILPVFSNSKFGVEAFEGNSPGLCGEPLKSCAGPSHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKKSMSESEDEIDEGEDEENGGSIGAGGEGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNSCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPIRTLHDFLHESRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNVRSKNVLVDDFFAARLTEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKSGRNGEFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEDGIVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8505839 8508395 - ClG42_09g0091300.10 Clacu09g0913 257221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0913 689 FunFam Leucine-rich repeat receptor-like protein kinase 213 305 - -
Clacu09g0913 689 MobiDBLite consensus disorder prediction 669 689 - -
Clacu09g0913 689 MobiDBLite consensus disorder prediction 345 366 - -
Clacu09g0913 689 Pfam Protein tyrosine and serine/threonine kinase 393 664 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0913 689 MobiDBLite consensus disorder prediction 670 689 - -
Clacu09g0913 689 Gene3D Transferase(Phosphotransferase) domain 1 467 682 - -
Clacu09g0913 689 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 108 203 - -
Clacu09g0913 689 SUPERFAMILY Protein kinase-like (PK-like) 394 665 IPR011009 -
Clacu09g0913 689 ProSiteProfiles Protein kinase domain profile. 389 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0913 689 Gene3D Phosphorylase Kinase; domain 1 374 465 - -
Clacu09g0913 689 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 118 671 IPR052451 -
Clacu09g0913 689 SUPERFAMILY L domain-like 61 280 - -
Clacu09g0913 689 Pfam Leucine Rich Repeat 163 185 IPR001611 GO:0005515(InterPro)
Clacu09g0913 689 Pfam Leucine Rich Repeat 140 159 IPR001611 GO:0005515(InterPro)
Clacu09g0913 689 Pfam Leucine rich repeat 215 273 IPR001611 GO:0005515(InterPro)
Clacu09g0913 689 Coils Coil 339 359 - -
Clacu09g0913 689 Gene3D Ribonuclease Inhibitor 47 208 IPR032675 -
Clacu09g0913 689 Gene3D Ribonuclease Inhibitor 209 306 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0474 Clacu-Chr1:4717443 Clacu09g0913 Clacu-Chr9:8505839 8.30E-45 dispersed
Clacu09g0913 Clacu-Chr9:8505839 Clacu10g2204 Clacu-Chr10:35105597 6.70E-68 dispersed
Clacu09g0913 Clacu-Chr9:8505839 Clacu07g1691 Clacu-Chr7:31652740 3.70E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73823 PF07714 PK_Tyr_Ser-Thr 2.80E-25 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0913 - - - 0.0