Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0915 ATGAATGATCTTGTGGAATTTCATTCTGAAGATTTGCATGCAGGGTTTGTAAATGAACAACAAGAAGAAATTATGGATCAAACACAGATCTGGCTTCATGATCAAAATCAACAACAACAAAATCATCAAAATTTTCTGTCTGATAATGATGATGATACTTTGATGTTCTACTCCGATTTCCCTCCACTGCCTGATTTTCCATGCATGTCGTCGTCTTCGTCGTCGTCGTCTACTCCTGCTCCGGTTAAAGCCACGGCTTCGTCCTCGTCGTCCTCCTCATCGTCCTCCGTCACTTCATGGGCAGTTTTGAAATCAGATGCTGATGAAATTACTGAAGAAATCAGAACAAATTATGATGCCAACAAATTATCATCGCCTCCGGTAGCGGAGACCGCGTTCACCGGTGGCGGGGATTGTACCGACGATATGATGATGGAGACGTTTGGATACATGGATTTACTCGAAGATAGTAACGAGTTTTTCGATCCGACGTGTATATTTCAAAACGAACAAGAACAACAACAAGAACAACGAGTAGTAGTAGAAGAAGATCAAGAGGGTTTGGAAGATTTGCAATTGGAGAGATTTGAAGAAGTGGAAATGGAGGATTTGATGATGATGCATGGCGGTGAAAGTAAGGATAATGATGATGATAATGGAGGGAAACAAAACGACGTGGTTGAGGAAGAAGATATGGCAAAGGTTTTTTTGGAATGGCTTAGGAGTAATAGAGAAACAGTTTCTGCTGATGATTTGAGGAATGTTAGAATAAAAAAAGCCACCATCGAAAGCGCCGCCCGCCGACTCGGCGGCGGCAAGGAGGGAATGAAACAGCTTTTGAAGCTTGTTCTTCAATGGGTTCAAACAAATCACCTTCACAAGAGGAAATTCAAAGATCTCACTGTTGAAACTGATACCCATTTCTTAGGGTTTCAAAATAACCCTAATTCCTCCTCCAACCTCCCTTGGATCCAAACCCCGCCCCCGTTACCGCCTCCGCCTTTGTATTCTTCTCCGATGCTCGGATATGTCCCGGCCACTGGCGGAGATGCGTATGGTGTTGGCCGTGGTTTCTCGGATCATTACGGCCAGTTACTTTACTCCTCCTTGTCCTGGAGTAATAATAGTAGTAGTAACAATAATAATAATTTCTCGGGACAGTTTGGACTACCCCCGTCGCATTTCAACTCCTTTGTTGATAATTTTGCGGCGGGGCCTCCCCTGCCACCGCCGCAACCACAAGGTTTTGCAACGGGGTATGGCGGAGGGCATCAATTCCCATATGTGGGTCAGTATTTTCAAGGGCAGGGTGGTAGTGGTGGCGCCGGTGGCGATAATGGTTTGGTTAGGTTGGATTCCTCAGCAACAAAGGAGGCTCGGAAGAAGAGAATGGCGAGGCAGCGGCGATTCTCTGCACATCATCGCCACCATCATGGTGGCCACCATGGCAACAGCCACCAAGATCAGCATCCCACTCAGATGAATCCTAATGCTTCAGATCATTGCAACATGGCTACAACTACTCAGCCCAATGCTGGTAACTGGGTCTACTGGCCGTCCCCCAGCGCAGCAGTGGCCTCTTCCGCCACATCTTCCGGATTTCCGGTGGACTCGCAGCCTGTACAAGCTGTTGATCGGCCTAATTCTTCCATGCAGAATCAGAACTACCCACCACGAATTCCATCTGACCGGCGGCTGGGATGGAAACCAGAGAAAAATTTGAAGTTTCTTTTACAGAAGGTTTTGAAACAAAGTGATGTGGGCAATTTGGGGAGAATTGTACTGCCAAAGAAAGAAGCAGAAACCCATCTCCCAGAATTGGAGGCAAGAGATGGGATTTCCATTGCAATGGAAGACATTGGAACTTCAAGAGTTTGGAATATGCGTTATAGGTATTGGCCAAACAACAAAAGCAGAATGTATCTCCTTGAAAATACAGGGGACTTTGTAAGAGCCAATGGACTTCAAGAAGGAGACTTCATTGTCATATACTCAGACGTCAAGTGTGGGAAATATATGATTCGAGGAGTGAAAGTACGGCAACCCGGGTCGAAACCCGAGAGCAGAAGGCCAGGAAAATCGCAAAGAAGCCATACGACTACGGCTGCCAATGCGTCGTCACCTTCGCTAACGACCATCGCAACACCGAAGAGACACTAA 2160 46.34 MNDLVEFHSEDLHAGFVNEQQEEIMDQTQIWLHDQNQQQQNHQNFLSDNDDDTLMFYSDFPPLPDFPCMSSSSSSSSTPAPVKATASSSSSSSSSSVTSWAVLKSDADEITEEIRTNYDANKLSSPPVAETAFTGGGDCTDDMMMETFGYMDLLEDSNEFFDPTCIFQNEQEQQQEQRVVVEEDQEGLEDLQLERFEEVEMEDLMMMHGGESKDNDDDNGGKQNDVVEEEDMAKVFLEWLRSNRETVSADDLRNVRIKKATIESAARRLGGGKEGMKQLLKLVLQWVQTNHLHKRKFKDLTVETDTHFLGFQNNPNSSSNLPWIQTPPPLPPPPLYSSPMLGYVPATGGDAYGVGRGFSDHYGQLLYSSLSWSNNSSSNNNNNFSGQFGLPPSHFNSFVDNFAAGPPLPPPQPQGFATGYGGGHQFPYVGQYFQGQGGSGGAGGDNGLVRLDSSATKEARKKRMARQRRFSAHHRHHHGGHHGNSHQDQHPTQMNPNASDHCNMATTTQPNAGNWVYWPSPSAAVASSATSSGFPVDSQPVQAVDRPNSSMQNQNYPPRIPSDRRLGWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPESRRPGKSQRSHTTTAANASSPSLTTIATPKRH 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8522117 8525154 - ClG42_09g0091500.10 Clacu09g0915 257223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0915 719 FunFam B3 domain-containing transcription factor FUS3 574 688 - -
Clacu09g0915 719 MobiDBLite consensus disorder prediction 680 719 - -
Clacu09g0915 719 MobiDBLite consensus disorder prediction 486 502 - -
Clacu09g0915 719 MobiDBLite consensus disorder prediction 529 559 - -
Clacu09g0915 719 MobiDBLite consensus disorder prediction 461 483 - -
Clacu09g0915 719 MobiDBLite consensus disorder prediction 695 719 - -
Clacu09g0915 719 MobiDBLite consensus disorder prediction 68 98 - -
Clacu09g0915 719 SUPERFAMILY DNA-binding pseudobarrel domain 577 673 IPR015300 -
Clacu09g0915 719 Gene3D - 574 690 IPR015300 -
Clacu09g0915 719 SMART B3_2 578 680 IPR003340 GO:0003677(InterPro)
Clacu09g0915 719 MobiDBLite consensus disorder prediction 454 502 - -
Clacu09g0915 719 MobiDBLite consensus disorder prediction 529 565 - -
Clacu09g0915 719 ProSiteProfiles B3 DNA-binding domain profile. 578 680 IPR003340 GO:0003677(InterPro)
Clacu09g0915 719 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 231 687 IPR044800 GO:0003700(InterPro)
Clacu09g0915 719 CDD BfiI_C_EcoRII_N_B3 576 677 - -
Clacu09g0915 719 Pfam B3 DNA binding domain 579 675 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0827 Clacu-Chr1:9109251 Clacu09g0915 Clacu-Chr9:8522117 2.10E-33 dispersed
Clacu01g2389 Clacu-Chr1:34551609 Clacu09g0915 Clacu-Chr9:8522117 8.60E-29 dispersed
Clacu09g0915 Clacu-Chr9:8522117 Clacu10g2238 Clacu-Chr10:35320971 9.90E-14 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48326 PF02362 B3 1.90E-17 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0915 K09287 - csv:101204282 1059.28