Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0945 ATGACGCTTTACGAAGAGAATCCAGGGGAGTCTCGGAAAGGTTTGGAAGGTGAGGATCTGTATGAAGAACTGTGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTGTCAATGGAGAAAGAGTTTTTTACTTTCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACGAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTTTGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACAGATGAGGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCCCAAAGCCCTGATCCAGAGCCGCCTGAGCGTACAAGGCAAACTGTTCATTCCTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGGAAGCATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGTTGCCAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACCGGGTGGAGTACATTTGTTACATCGAAGCGGCTGGTTGCTGGGGATGCCTTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTTGGAGTTCGACGGCAGGCTCGGCAGCAGAGTTTGATGCCTTCCTCCGTGATATCTAGCCATAGTATGCACCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGAACGCAGACCTATTTCGTTGTTTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTGAACAAATACTTGGAGACGATTAAAAACGGATATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCACCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATTTCTCCGCAATGGTTGAATTCTAAATGGCGATCGCTAAAGATTCAATGGGATGAACCTGCTACGATTCAGAGGCCAGAACGAGTTTCTCCATGGGAGATTGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCCATAAAAAGTAAAAGGGCTCGTCCTGTCGAGATTCCTTCACCTGAAATTACTTCCAGTTCAGCCCCTTCGGGCTTTTGGCTTCAAGGATCGACAATTCCTCATGAAATACCCCAACTAAGTGGTACGAATGAAGTTCAAAGCAGCAATAACCGGGTTGTCTGGGCTCTCGGACAGCGAAAACTCGACAGCAATAGCAACCACAGTAATCCAATAGCAAATGTTGAAGGCATCTGGCCTTCTCCTCCACTCAATATTTCCCTGAAGCTTTACCCAGATTCAACATTTGATAGCGAACTTGTTCAAAAGCAGGCACCACCCTCTCCTTATTCTTCATCTGTCACATCAAAGCCTAGTAGTGACCTCATACAGCACGATCAACTGGAGAAAGGGAATAAAACCGACATTTCTCTCGGTTGCCGAATATTTGGAATCGATTTGAAAAATAACTCAAGCATTGTCTCTTCCTTGGAAAGAAAATCGTGTTGCCCAATGACGGTGGCCAATGGTGCCAAAGATCCAGTAGCTGCAGCTGCTGTGACACCTCCAGTCGTTGTTGGAAACCTCTCACAGCCTTCAAAGGAGCAGCTGCAAGCGTCATCAGAGGTGTCGACAAAGGGAACACAGACAAAACACATTTCCAATCTCTCATTGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCGGTTGGTCGAGCGGTCGACTTGACTACACTTGAAGGGTATGAAGATCTGATAGACGAGCTGGAGAATGTATTTGAAATAAAAGGAGAACTTCGTGAAATGAACAAATGGTCTGTCGTTTTCACGGATGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGCGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGTAGGGAAAGCAAGCTTGTTTCCCCATCTTCCTTGGATAGCTTGGATTCAGAGCGCAAGACTGAATCCTAA 2082 45.44 MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVNGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETIKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPQWLNSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPSPEITSSSAPSGFWLQGSTIPHEIPQLSGTNEVQSSNNRVVWALGQRKLDSNSNHSNPIANVEGIWPSPPLNISLKLYPDSTFDSELVQKQAPPSPYSSSVTSKPSSDLIQHDQLEKGNKTDISLGCRIFGIDLKNNSSIVSSLERKSCCPMTVANGAKDPVAAAAVTPPVVVGNLSQPSKEQLQASSEVSTKGTQTKHISNLSLRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELREMNKWSVVFTDDENDMMLVGDDPWPEFCKMAKRIFIYSSEEVKKMSRESKLVSPSSLDSLDSERKTES 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8817222 8820669 + ClG42_09g0094500.10 Clacu09g0945 257253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0945 693 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
Clacu09g0945 693 Pfam Auxin response factor 251 330 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu09g0945 693 MobiDBLite consensus disorder prediction 670 693 - -
Clacu09g0945 693 SUPERFAMILY CAD & PB1 domains 579 659 - -
Clacu09g0945 693 ProSiteProfiles PB1 domain profile. 583 675 IPR053793 -
Clacu09g0945 693 Gene3D - 122 227 IPR015300 -
Clacu09g0945 693 CDD B3_DNA 123 225 IPR003340 GO:0003677(InterPro)
Clacu09g0945 693 Pfam AUX/IAA family 629 667 IPR033389 -
Clacu09g0945 693 Pfam AUX/IAA family 562 619 IPR033389 -
Clacu09g0945 693 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Clacu09g0945 693 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
Clacu09g0945 693 MobiDBLite consensus disorder prediction 555 576 - -
Clacu09g0945 693 MobiDBLite consensus disorder prediction 99 121 - -
Clacu09g0945 693 Gene3D - 287 358 - -
Clacu09g0945 693 FunFam Auxin response factor 578 671 - -
Clacu09g0945 693 FunFam Auxin response factor 286 357 - -
Clacu09g0945 693 FunFam Auxin response factor 123 227 - -
Clacu09g0945 693 Gene3D - 579 671 - -
Clacu09g0945 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 673 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu09g0945 693 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0945 Clacu-Chr9:8817222 Clacu11g0281 Clacu-Chr11:2590416 4.10E-17 dispersed
Clacu01g0174 Clacu-Chr1:1746566 Clacu09g0945 Clacu-Chr9:8817222 2.10E-203 transposed
Clacu01g2417 Clacu-Chr1:34746099 Clacu09g0945 Clacu-Chr9:8817222 8.80E-95 transposed
Clacu02g2157 Clacu-Chr2:34720755 Clacu09g0945 Clacu-Chr9:8817222 2.70E-124 transposed
Clacu07g1150 Clacu-Chr7:26172365 Clacu09g0945 Clacu-Chr9:8817222 1.20E-210 transposed
Clacu11g0173 Clacu-Chr11:1432098 Clacu09g0945 Clacu-Chr9:8817222 8.30E-180 transposed
Clacu07g0130 Clacu-Chr7:1712356 Clacu09g0945 Clacu-Chr9:8817222 6.30E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48328 PF02309 AUX_IAA 6.80E-06 CL0072 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0945 K14486 - csv:101205805 1241.87