Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g0945 | ATGACGCTTTACGAAGAGAATCCAGGGGAGTCTCGGAAAGGTTTGGAAGGTGAGGATCTGTATGAAGAACTGTGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTGTCAATGGAGAAAGAGTTTTTTACTTTCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACGAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTTTGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACAGATGAGGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCCCAAAGCCCTGATCCAGAGCCGCCTGAGCGTACAAGGCAAACTGTTCATTCCTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGGAAGCATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGTTGCCAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACCGGGTGGAGTACATTTGTTACATCGAAGCGGCTGGTTGCTGGGGATGCCTTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTTGGAGTTCGACGGCAGGCTCGGCAGCAGAGTTTGATGCCTTCCTCCGTGATATCTAGCCATAGTATGCACCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGAACGCAGACCTATTTCGTTGTTTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTGAACAAATACTTGGAGACGATTAAAAACGGATATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCACCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATTTCTCCGCAATGGTTGAATTCTAAATGGCGATCGCTAAAGATTCAATGGGATGAACCTGCTACGATTCAGAGGCCAGAACGAGTTTCTCCATGGGAGATTGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCCATAAAAAGTAAAAGGGCTCGTCCTGTCGAGATTCCTTCACCTGAAATTACTTCCAGTTCAGCCCCTTCGGGCTTTTGGCTTCAAGGATCGACAATTCCTCATGAAATACCCCAACTAAGTGGTACGAATGAAGTTCAAAGCAGCAATAACCGGGTTGTCTGGGCTCTCGGACAGCGAAAACTCGACAGCAATAGCAACCACAGTAATCCAATAGCAAATGTTGAAGGCATCTGGCCTTCTCCTCCACTCAATATTTCCCTGAAGCTTTACCCAGATTCAACATTTGATAGCGAACTTGTTCAAAAGCAGGCACCACCCTCTCCTTATTCTTCATCTGTCACATCAAAGCCTAGTAGTGACCTCATACAGCACGATCAACTGGAGAAAGGGAATAAAACCGACATTTCTCTCGGTTGCCGAATATTTGGAATCGATTTGAAAAATAACTCAAGCATTGTCTCTTCCTTGGAAAGAAAATCGTGTTGCCCAATGACGGTGGCCAATGGTGCCAAAGATCCAGTAGCTGCAGCTGCTGTGACACCTCCAGTCGTTGTTGGAAACCTCTCACAGCCTTCAAAGGAGCAGCTGCAAGCGTCATCAGAGGTGTCGACAAAGGGAACACAGACAAAACACATTTCCAATCTCTCATTGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCGGTTGGTCGAGCGGTCGACTTGACTACACTTGAAGGGTATGAAGATCTGATAGACGAGCTGGAGAATGTATTTGAAATAAAAGGAGAACTTCGTGAAATGAACAAATGGTCTGTCGTTTTCACGGATGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGCGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGTAGGGAAAGCAAGCTTGTTTCCCCATCTTCCTTGGATAGCTTGGATTCAGAGCGCAAGACTGAATCCTAA | 2082 | 45.44 | MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVNGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETIKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPQWLNSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPSPEITSSSAPSGFWLQGSTIPHEIPQLSGTNEVQSSNNRVVWALGQRKLDSNSNHSNPIANVEGIWPSPPLNISLKLYPDSTFDSELVQKQAPPSPYSSSVTSKPSSDLIQHDQLEKGNKTDISLGCRIFGIDLKNNSSIVSSLERKSCCPMTVANGAKDPVAAAAVTPPVVVGNLSQPSKEQLQASSEVSTKGTQTKHISNLSLRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELREMNKWSVVFTDDENDMMLVGDDPWPEFCKMAKRIFIYSSEEVKKMSRESKLVSPSSLDSLDSERKTES | 693 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8817222 | 8820669 | + | ClG42_09g0094500.10 | Clacu09g0945 | 257253 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g0945 | 693 | SMART | B3_2 | 125 | 227 | IPR003340 | GO:0003677(InterPro) | |
Clacu09g0945 | 693 | Pfam | Auxin response factor | 251 | 330 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Clacu09g0945 | 693 | MobiDBLite | consensus disorder prediction | 670 | 693 | - | - | |
Clacu09g0945 | 693 | SUPERFAMILY | CAD & PB1 domains | 579 | 659 | - | - | |
Clacu09g0945 | 693 | ProSiteProfiles | PB1 domain profile. | 583 | 675 | IPR053793 | - | |
Clacu09g0945 | 693 | Gene3D | - | 122 | 227 | IPR015300 | - | |
Clacu09g0945 | 693 | CDD | B3_DNA | 123 | 225 | IPR003340 | GO:0003677(InterPro) | |
Clacu09g0945 | 693 | Pfam | AUX/IAA family | 629 | 667 | IPR033389 | - | |
Clacu09g0945 | 693 | Pfam | AUX/IAA family | 562 | 619 | IPR033389 | - | |
Clacu09g0945 | 693 | SUPERFAMILY | DNA-binding pseudobarrel domain | 116 | 254 | IPR015300 | - | |
Clacu09g0945 | 693 | ProSiteProfiles | B3 DNA-binding domain profile. | 125 | 227 | IPR003340 | GO:0003677(InterPro) | |
Clacu09g0945 | 693 | MobiDBLite | consensus disorder prediction | 555 | 576 | - | - | |
Clacu09g0945 | 693 | MobiDBLite | consensus disorder prediction | 99 | 121 | - | - | |
Clacu09g0945 | 693 | Gene3D | - | 287 | 358 | - | - | |
Clacu09g0945 | 693 | FunFam | Auxin response factor | 578 | 671 | - | - | |
Clacu09g0945 | 693 | FunFam | Auxin response factor | 286 | 357 | - | - | |
Clacu09g0945 | 693 | FunFam | Auxin response factor | 123 | 227 | - | - | |
Clacu09g0945 | 693 | Gene3D | - | 579 | 671 | - | - | |
Clacu09g0945 | 693 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 19 | 673 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Clacu09g0945 | 693 | Pfam | B3 DNA binding domain | 125 | 226 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu09g0945 | Clacu-Chr9:8817222 | Clacu11g0281 | Clacu-Chr11:2590416 | 4.10E-17 | dispersed | |
Clacu01g0174 | Clacu-Chr1:1746566 | Clacu09g0945 | Clacu-Chr9:8817222 | 2.10E-203 | transposed | |
Clacu01g2417 | Clacu-Chr1:34746099 | Clacu09g0945 | Clacu-Chr9:8817222 | 8.80E-95 | transposed | |
Clacu02g2157 | Clacu-Chr2:34720755 | Clacu09g0945 | Clacu-Chr9:8817222 | 2.70E-124 | transposed | |
Clacu07g1150 | Clacu-Chr7:26172365 | Clacu09g0945 | Clacu-Chr9:8817222 | 1.20E-210 | transposed | |
Clacu11g0173 | Clacu-Chr11:1432098 | Clacu09g0945 | Clacu-Chr9:8817222 | 8.30E-180 | transposed | |
Clacu07g0130 | Clacu-Chr7:1712356 | Clacu09g0945 | Clacu-Chr9:8817222 | 6.30E-07 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48328 | PF02309 | AUX_IAA | 6.80E-06 | CL0072 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g0945 | K14486 | - | csv:101205805 | 1241.87 |