Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0963 ATGGGGCGAAAGAAGCCTACTGCAAGGGATGATGACAGCGCCCCTGCGGCAGCCCATGGTGGTGGGAAGTCCAAGAAAAAAACGTTTGCAGTAGACGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAACCCCAGGTTCCGGAGGAGAAGGTCGTGATAACTGGGAAGAAGAAGGGTAAGAAAGGCAATTCAAAAGCTTCACAACTTAAAGAGGATGACGATGACGATGATGTGGACGGTGTTTCAGAAATTGTTATTACCGGGAAGAAGAAGGGCAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTACTGCTGCCAGTTTTGGTTTGCTTGAAGAGGAGGGAATGGATGACGATGATGAATCTGTGTTGACTGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGCGATCAAGTTTTCAGGTAAGAAGAAGTCATCCAAATCTTCAAAGAAGAGTGGTTTTTCTGCAGTGTCAGCATTCACTGCCCTTAATGATGAGAATGATGAGGATGTAATTGGTGATGAGGTCAGGGTTGATGAAGATATTGATGATGAGCCTGTTATTGCATTTACTGGTAAGAAGAAGTCATCAAAAGGTGGCAAGAAGGCCGGGAGTGCATTTACAGGTTTTAGTGGTCTTGACTATGAGGACGAGGACAGAGATGATGATGATAAAGATGGGGATGAAGATGTTACATCAATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGCTAAGGCTTCAAAGAAGGGTGGAAATTTGTTTAGTGCAGCATTAGCAGATGAGGAAAATGGTGGCGATGTTTCTATTTCAGAGCCAAATAAATTAGACAATGATGGTGTTAATGAAGACGATGTCAATGTTATTGCATTTTCTGGTAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAAATGATGAAAATGCGCAGGGCAATGAAGTTAAGGATGTAGTTGTACCTGAAATACTTAATACAGTAAGTAGCAATCTTGATTCTGATTTATCTAATGCTAACAAGATGGAAGCGGTGGCAGAGACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTGGCTGAGCTAGGAGAAGGGCCTACCATATCAAAACCAGCAGACCCTCCCCTTTCTTCCCAGGAGGCCAAAGTTGAGAATCCACCTGAGCCAGTAGCTCCTCCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAATCGGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAAGAAAAAAAGGCTGCTGCTGCTGCAGCAGCTGCTGAAGGGAATGATGAAAAAATTGAGGAGGTAAAGACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCGGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAGGAAGCAATGGCTAGAAGAAAAGAAGAAGAAGAGCGAAGGAAAAGGGAGGAGGAAGAGAGATTGAGAAAGGAAGAAGAAGAGAGACGTAGGCTAGAAGAACTCGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTTTTAAGGAAGAAACAGGAAGGCAAGCTATTAACAGGTAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATTTTATCAAATGCCGGAGGTTTACCTCTGTCTACATCTGACCCTAGTGCACCATCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCAGCCCATCATCAAACAAATGGAAATGCACAAACGAAGGGAGTGGAGCATACAGAAGAAAAAATACAAGAAAAAGATGTGGCAGAGACAGAAATATTGGAGTCACAGAAGATTGCAGCTGTTGAGTTGATGCATGTGGAGGAAAAAGCAGATGTTGTTGAGGCTACAGAAGACAATGAAATTCAAGAAGATGAGGATGAGGATGAATGGGATGCGAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTCGCTGACGAGGAGCTTGAATCAGAACCTGAGAATGGCATGAAAAAAGATACAAAAAATGGTGCAGGTGCCAAGCTAGCTGCCCCTGCTCAAAAAGGTTTACCTTCTCAGTCTATAAAGTCACAAGATATTGAAAACAAAAAGAAGCAGGACGAGGTTGAGGTTGCCGCCAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAGCTTCAGTCCCAGATGCTACTCCTGTACCACAGGAAGAAAATCTTCGCTCGCCCATATGTTGTATTATGGGTCATGTTGATACTGGTAAAACCAAGCTGCTGGACTGTATCCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAGAACATTCGGGAAAGAACTAGGGAATTGAAGGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCATGAGTCGTTTACAAACTTACGTTCTCGTGGTTCGGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCCTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAATACAGAATTTATTGTTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATTCTTAAGACAATGAAGCAGCAAACCAAGGATGTGCAGAACGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACATGTTACTATTATTGGTGCAGTGGGCCCAGAGAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGTTGCATGAAGGAGATCAAATTGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGGGTGAAGGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATTAAAATAACTGGACAGGGTCTCGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATATATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTTTTTCCTTGTGTTCTCAAAATTCTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTGATTGAGGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAACCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCTATTAAGATAGTTGGGCACTCTTCGGAGGAGCAACAAAAGATGTATGGTAGACACTTTGATTTGGAGGACGAACTTGTCAGCCATATATCGAGGAAGTCCATTGACCTTCTCAAAGCGAACTACCGGGATGATTTGTCCACGGATGAGTGGAGACTCGTGGTGAAATTGAAGAATCTCTTCAAGATACAGTGA 4080 42.25 MGRKKPTARDDDSAPAAAHGGGKSKKKTFAVDDDEYSIGTELSEEPQVPEEKVVITGKKKGKKGNSKASQLKEDDDDDDVDGVSEIVITGKKKGKSKKGGSSSAFTAASFGLLEEEGMDDDDESVLTAEKDDDEEEDSAIKFSGKKKSSKSSKKSGFSAVSAFTALNDENDEDVIGDEVRVDEDIDDEPVIAFTGKKKSSKGGKKAGSAFTGFSGLDYEDEDRDDDDKDGDEDVTSISFSGKKKKSAKASKKGGNLFSAALADEENGGDVSISEPNKLDNDGVNEDDVNVIAFSGKKKSSKKKSSSTFTALNDENAQGNEVKDVVVPEILNTVSSNLDSDLSNANKMEAVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPTISKPADPPLSSQEAKVENPPEPVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRLEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILSNAGGLPLSTSDPSAPSKRPKYQTKKTKPAHHQTNGNAQTKGVEHTEEKIQEKDVAETEILESQKIAAVELMHVEEKADVVEATEDNEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENGMKKDTKNGAGAKLAAPAQKGLPSQSIKSQDIENKKKQDEVEVAAKGKRKDDAVKKKASVPDATPVPQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQRTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ 1359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9019832 9032694 + ClG42_09g0096300.10 Clacu09g0963 257271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0963 1359 Gene3D Translation factors 990 1108 - -
Clacu09g0963 1359 CDD IF2_eIF5B 770 980 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 610 624 - -
Clacu09g0963 1359 Pfam Translation-initiation factor 2 1096 1208 IPR023115 -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 725 753 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 570 588 - -
Clacu09g0963 1359 FunFam Eukaryotic translation initiation factor 5B 761 989 - -
Clacu09g0963 1359 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1092 1221 IPR036925 -
Clacu09g0963 1359 Coils Coil 415 444 - -
Clacu09g0963 1359 SUPERFAMILY Translation proteins 1226 1358 IPR009000 -
Clacu09g0963 1359 Gene3D - 762 989 IPR027417 -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 218 232 - -
Clacu09g0963 1359 PRINTS GTP-binding elongation factor signature 851 862 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g0963 1359 PRINTS GTP-binding elongation factor signature 835 845 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g0963 1359 PRINTS GTP-binding elongation factor signature 771 784 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g0963 1359 PRINTS GTP-binding elongation factor signature 887 896 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g0963 1359 NCBIfam small GTP-binding protein domain 772 898 IPR005225 GO:0005525(InterPro)
Clacu09g0963 1359 Coils Coil 478 545 - -
Clacu09g0963 1359 Pfam Elongation factor Tu domain 4 1229 1302 IPR029459 -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 683 701 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 109 156 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 334 350 - -
Clacu09g0963 1359 FunFam eukaryotic translation initiation factor 5B 990 1109 - -
Clacu09g0963 1359 Coils Coil 1204 1224 - -
Clacu09g0963 1359 Gene3D Translation factors 1222 1359 - -
Clacu09g0963 1359 Pfam Elongation factor Tu GTP binding domain 770 979 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g0963 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 767 1058 IPR027417 -
Clacu09g0963 1359 Gene3D - 1109 1215 IPR036925 -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 363 378 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 334 624 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 114 136 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 449 562 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 187 320 - -
Clacu09g0963 1359 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 767 983 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 407 428 - -
Clacu09g0963 1359 CDD aeIF5B_II 991 1101 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 1 81 - -
Clacu09g0963 1359 FunFam Eukaryotic translation initiation factor 5B 1222 1359 - -
Clacu09g0963 1359 CDD IF2_aeIF5B_IV 1230 1325 - -
Clacu09g0963 1359 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 417 1358 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
Clacu09g0963 1359 FunFam Eukaryotic translation initiation factor 5B 1109 1215 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 653 670 - -
Clacu09g0963 1359 MobiDBLite consensus disorder prediction 647 763 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0963 Clacu-Chr9:9019832 Clacu11g1808 Clacu-Chr11:29240449 9.90E-23 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0963 K03243 - csv:101204360 2019.97