Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0964 ATGTCAACACTGAGCCAGAGCAGCTCCCTCAACAGTTGCACTAAGTTTCCCCACCCTCCCCATGACCATGTAGTAGATGAAATCCAATCCCAACCCTTTGACTACTCCAAACGCGCCCAATGGCTACGCGCCGCGGTCCTTGGTGCCAACGATGGCCTCGTCTCTACGGCATCTCTCATGATGGGCGTCGGTGCCGTCAAGCACGACGTCAAGGCCATGATCCTCACCGGCTTTGCTGGCCTCATTGCCGGTGCCTGCAGCATGGCCATCGGTGAGTTCGTTTCTGTCTACTCTCAATTGGATATAGAAATGGCGCATATAGAAAGAAACAAGGATCATAGGAAGGAGTTGGAGGAAGAGGAGAGAGAGAAACTACCAAACCCTCTTCAGGCGGCAGCGGCTTCGGCCTTGGCCTTTTCCACGGGGGCAATAGTGCCACTGTTGGCCGCAGCGTTTATAAGGCAGTATAGGCTCCGGCTCGGGGTGGTGGTGGTGGCAGTCACAGTGGCGCTGGTAGGGTTCGGTTGGCTGGGTGCAGCATTAGGGAAGGCGCCAACCATCAGGTCCATAGTGAGGGTCTTGATTGGTGGGTGGGCAGCCATGGCTGTAACTTTTGGATTGACTAAGTTGATTGGATCGAGTGGATTATGA 651 54.84 MSTLSQSSSLNSCTKFPHPPHDHVVDEIQSQPFDYSKRAQWLRAAVLGANDGLVSTASLMMGVGAVKHDVKAMILTGFAGLIAGACSMAIGEFVSVYSQLDIEMAHIERNKDHRKELEEEEREKLPNPLQAAAASALAFSTGAIVPLLAAAFIRQYRLRLGVVVVAVTVALVGFGWLGAALGKAPTIRSIVRVLIGGWAAMAVTFGLTKLIGSSGL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9035772 9036422 - ClG42_09g0096400.10 Clacu09g0964 257272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0964 216 Coils Coil 103 123 - -
Clacu09g0964 216 MobiDBLite consensus disorder prediction 1 15 - -
Clacu09g0964 216 Pfam VIT family 116 208 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Clacu09g0964 216 Pfam VIT family 42 125 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Clacu09g0964 216 MobiDBLite consensus disorder prediction 1 22 - -
Clacu09g0964 216 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 19 213 IPR008217 GO:0005381(PANTHER)|GO:0005384(InterPro)|GO:0005384(PANTHER)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(PANTHER)|GO:0030026(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0842 Clacu-Chr8:18461279 Clacu09g0964 Clacu-Chr9:9035772 1.30E-73 dispersed
Clacu09g0964 Clacu-Chr9:9035772 Clacu09g1502 Clacu-Chr9:23676683 6.80E-59 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0964 K22736 - csv:101210510 365.925