Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0965 ATGCTGATGGAACCCAATTTCTCGTCGGCGAAGCCACCGCAGCCGGCGGCGATGGACATCGAACAGATGTCGGAGAATCCTCACCGTGGTTCCCACCACCGCCGCTCCCACTCCGACACTTCCTTCCGCTTCCCAAACCTCGACGAACTTCTCTTCTTCGACCCTTCAGAGCTCGACCTCTCGATGCTCTCTTCCCCTTCTTCTCCACCTCCTGGCGGCACTGCCATGGCAGTTGATTCGTCTAATGCTAAGTTTTCTGATGACGCCGTTCGCCCTAAGCCGGAGCCGATTGCCTCTGGACCATTCGGTGGTCACTTGCGGAGCTTGTCCATGGACTCTGATTTCTTCAAGAATCTGGACCTTGGTGGTGATAGTGGGGAGATCGATTCTTTGGGGAAGAAGACTCCGGCGAGTGAACAGCGGCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTTGAGGCCGATTCAACCCTAGTGATTGATGGAGTGAAGAAAGCAATGGACCCGGAGAGACTTGCGGAGCTTGCCCTAATTGACCCGAAAAGAGCTAAAAGGATTCTAGCGAACAGACAATCTGCAGCTCGTTCGAAAGAGAGGAAGATACGGTACACGAATGAGCTGGAGAGAAAGGTTCAGACTCTGCAGTCCGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTACAGAGAGATACAAGTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAACAAGCACAACTTCGAGATGCTCTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCTGCAGGCCAGGTTGCATCGATCAATGGAAATCTTTTCAACCGACCTCCTCAATATCCTTCATCCCGGCCACCTGTACACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCAGCAGCCACCATCCATGTTGGCTACCAACCAGCAGCAGCAATCAGATCCCAAATGGACAAACTCGTCTCAGCTTCTCAGTCGAAGTCCGGATGGCCAAGCAAAGCCTTAG 1062 52.17 MLMEPNFSSAKPPQPAAMDIEQMSENPHRGSHHRRSHSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPPGGTAMAVDSSNAKFSDDAVRPKPEPIASGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGKKTPASEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVASINGNLFNRPPQYPSSRPPVHHFSSSHAQQGQQQQPPSMLATNQQQQSDPKWTNSSQLLSRSPDGQAKP 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9062937 9066131 + ClG42_09g0096500.10 Clacu09g0965 257273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0965 353 SMART brlzneu 183 247 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0965 353 Pfam bZIP transcription factor 187 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0965 353 Gene3D - 186 239 - -
Clacu09g0965 353 MobiDBLite consensus disorder prediction 288 353 - -
Clacu09g0965 353 SUPERFAMILY Leucine zipper domain 187 238 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0965 353 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 337 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu09g0965 353 Coils Coil 210 230 - -
Clacu09g0965 353 Coils Coil 238 258 - -
Clacu09g0965 353 MobiDBLite consensus disorder prediction 84 104 - -
Clacu09g0965 353 MobiDBLite consensus disorder prediction 1 41 - -
Clacu09g0965 353 FunFam Transcription factor VIP1 186 239 - -
Clacu09g0965 353 MobiDBLite consensus disorder prediction 126 157 - -
Clacu09g0965 353 MobiDBLite consensus disorder prediction 302 347 - -
Clacu09g0965 353 CDD bZIP_plant_RF2 188 237 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0965 353 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0841 Clacu-Chr8:18442680 Clacu09g0965 Clacu-Chr9:9062937 2.20E-88 dispersed
Clacu09g0965 Clacu-Chr9:9062937 Clacu11g1956 Clacu-Chr11:30534716 3.60E-09 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48330 PF00170 bZIP_1 1.10E-07 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0965 K20557 - csv:101207973 588.186