Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1007 ATGGCCTTCAGTTCTACAGTAGCATCGCAGCTCCATGTTTTCCGAACCTCCAATCTCCGATTCCCGGACTCCAACAAATCCTGGAGTCGGAGACGGCGAAGCACAGCGGTCTCCGTAATCCGGTGCGAGAAGGTCGTGGGAATCGACCTAGGAACGACGAACTCAGCGGTGGCGGCAATGGAGGGAGGGCAGCCGACGATCGTGACGAACGCGGAGGGACAGAGGACGACGCCGTCGGTGGTAGCGTACACGAGGAACGGCGATCGGCTTGTTGGTCAGTTGGCGAAGCGGCAGGCGGTGGTTAATCCGGAGAACACTTTCTTCTCCGTGAAGAGGTTCATTGGAAGGAAAATGGCGGAGGTGGACGAAGAGGCAAAGCAAGTGTCTTACAAGGTTATCGCCGATGAGAATGGGAATGTGAAGCTCGATTGCCCTGCCGTCGGCAAGCAGTTCGCCGCCGAGGAGATTTCCGCTCAGGTTTTAAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAATGATCAAGTAGGAAAAGCTGTAGTAACGGTACCAGCATATTTCAATGACTCTCAAAGAACAGCGACGAAAGATGCTGGTCGCATTGCTGGTCTCGAAGTTCTTCGCATCATCAATGAACCAACTGCTGCTTCACTTGCCTATGGCTTTGACAAGAAAACCAATGAGACCATTCTCGTTTTCGACCTCGGCGGTGGAACGTTTGACGTCTCAGTCCTTGAGGTTGGAGATGGCGTATTTGAGGTGCTTTCTACTTCAGGCGATACACATTTGGGTGGAGATGATTTTGACAAGAGGATTGTCGATTGGCTCGCCGAGAGCTTTAAGAGGGATGAAGGAATTGATCTTCTGAAAGACAAACAAGCGCTGCAACGTTTAACGGAAACTGCTGAGAAGGCAAAGATTGAGTTATCATCTTTAACACAGACCAATATTAGTTTGCCATTTATCACTGCAACCAGCGACGGCCCCAAACATATTGATACTACGCTTACTAGGGTCAAGTTTGAAGAGTTATGTTCAGACTTGCTAGATAGGCTGCGATCACCGGTTGAAACGGCTCTAAAGGATGCAAAGTTGTCGTTCAAAGATATAGATGAAGTCATTCTTGTTGGGGGCTCGACTCGTATACCAGCAGTTCAGGAGCTTGTCAAGAAAATGACAGGGAAAGAACCGAATATGACTGTAAATCCTGATGAAGTGGTTGCTCTCGGGGCCGCAGTTCAGGCTGGTGTTTTGGCTGGAGATGTCAGTGACATTGTTCTCTTAGATGTCACACCTCTCTCTCTCGGTTTGGAAACTTTAGGTGGAGTGATGACCAAAATCATTCCAAGGAACACAACCTTACCCACATCCAAATCGGAGGTGTTTTCGACAGCAGCAGATGGACAAACAAGTGTTGAGATTAACGTATGTCAAGGCGAACGAGAGTTTGTTCGGGACAATAAGTCTCTCGGACGAATTCTCCTGGACGGTATCCCACCCGCACCTCGTGGTGTTCCTCAGATTGAAGTGAAATTTGACATTGATGCTAATGGCATTCTCTCTGTAACTGCCATTGACAAGGGAACCGGGAAGAAGCAGGACATCACAATCACTGGCGCTAGTACTTTACCAAGTGATGAGGTGGACAGAATGGTTAAAGAAGCAGAGAGGTTTGCAAAGGAAGACAAGGAGAAGAGGGATGCCATAGACACAAAGAACCAAGCAGATTCTGTTGTGTACCAAACTGAAAAACAGCTAAAGGAGCTGGAAGACAAAATTCCCACCTCGGTTCGAGATACCGTTGAGGCTAAGCTCAAAGAACTTAAGGATGCCATCTCTAACGGGTCAACTGAAACTATCAAAAACTCCATGGCTGCACTGAATCAAGAAGTAATGCAGATGGGGCAGTCCCTCTATAGCCAGGCAACGGCCTCGAGTGATGGGACTGCGTCAGGAACTCAGTCTACTTCATCAGGATCAGCCGGAGAAACTGATGGGGATGTTGTTGATGCAGATTTTGTGGATAGTGACCGCGATCGTCTCTCTTCTCCTTCACCGTTCTTACCTTGGACCTCTTCATCTTCTTCTCCGGCGAACGCACAAGGTGCTCCGGCGTCTTCTCCTTGCGCGCAAGCGTTTTGCAGACGGGGACCAGACCACGTCAACTTCTGTAGCGTGATCCAGCCACGGTCGAAGACCAATCCAGGACCTCCGGTGATCTGTTGGCAGCAATCACGCGACTTGAACACCTTGCAGAAGCATTTTTCTTCTTTCGCCAAGGTAGCATCTGCTTCTAGTGTCTGTTTTGTATCTTTTAAGATGCTTCCTCTTTCGCTCCTAAAGACTGCTCAAGGTCACCCAATGTTGGTGGAGTTGAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGATACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCAAAAGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATCGATAAAGTTCAGGAAGAAGCCAAAAGCCGTGCAGATAGGAAACCTCCAGTGTTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGAAGACCAGCCAAAGGAATGGGCCGAGGCTTTGATGATGGTGCCAAAGCTGCTTCTGGAGGCCGTGGAAAAGGTGGCCCTGGTGGAAAACCTGGTGGCAACAGAGTTGGAGGCAGGGGCCGAGGGTGA 2769 49.04 MAFSSTVASQLHVFRTSNLRFPDSNKSWSRRRRSTAVSVIRCEKVVGIDLGTTNSAVAAMEGGQPTIVTNAEGQRTTPSVVAYTRNGDRLVGQLAKRQAVVNPENTFFSVKRFIGRKMAEVDEEAKQVSYKVIADENGNVKLDCPAVGKQFAAEEISAQVLRKLVDDASKFLNDQVGKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFDKKTNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTNISLPFITATSDGPKHIDTTLTRVKFEELCSDLLDRLRSPVETALKDAKLSFKDIDEVILVGGSTRIPAVQELVKKMTGKEPNMTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVCQGEREFVRDNKSLGRILLDGIPPAPRGVPQIEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVDRMVKEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELEDKIPTSVRDTVEAKLKELKDAISNGSTETIKNSMAALNQEVMQMGQSLYSQATASSDGTASGTQSTSSGSAGETDGDVVDADFVDSDRDRLSSPSPFLPWTSSSSSPANAQGAPASSPCAQAFCRRGPDHVNFCSVIQPRSKTNPGPPVICWQQSRDLNTLQKHFSSFAKVASASSVCFVSFKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEEAKSRADRKPPVLGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGGNRVGGRGRG 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9554875 9567127 + ClG42_09g0100700.10 Clacu09g1007 257315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1007 922 MobiDBLite consensus disorder prediction 639 663 - -
Clacu09g1007 922 FunFam Molecular chaperone DnaK 265 352 - -
Clacu09g1007 922 SUPERFAMILY Actin-like ATPase domain 44 224 IPR043129 -
Clacu09g1007 922 SUPERFAMILY Actin-like ATPase domain 227 418 IPR043129 -
Clacu09g1007 922 ProSitePatterns Heat shock hsp70 proteins family signature 1. 48 55 IPR018181 -
Clacu09g1007 922 Pfam LSM domain 779 843 IPR001163 -
Clacu09g1007 922 SMART Sm3 778 844 IPR001163 -
Clacu09g1007 922 Coils Coil 572 592 - -
Clacu09g1007 922 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 420 576 IPR029047 -
Clacu09g1007 922 Gene3D - 774 856 - -
Clacu09g1007 922 MobiDBLite consensus disorder prediction 685 703 - -
Clacu09g1007 922 Hamap Chaperone protein DnaK [dnaK]. 42 676 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Clacu09g1007 922 Gene3D - 221 402 - -
Clacu09g1007 922 CDD LSm4 775 850 IPR034101 GO:0000398(InterPro)|GO:0000956(InterPro)
Clacu09g1007 922 MobiDBLite consensus disorder prediction 854 922 - -
Clacu09g1007 922 SUPERFAMILY Sm-like ribonucleoproteins 776 894 IPR010920 -
Clacu09g1007 922 Coils Coil 288 315 - -
Clacu09g1007 922 ProSitePatterns Heat shock hsp70 proteins family signature 3. 373 387 IPR018181 -
Clacu09g1007 922 CDD HSPA9-Ssq1-like_NBD 42 418 - -
Clacu09g1007 922 Gene3D Actin; Chain A, domain 4 265 352 - -
Clacu09g1007 922 MobiDBLite consensus disorder prediction 639 703 - -
Clacu09g1007 922 PANTHER HEAT SHOCK PROTEIN 70KDA 45 608 IPR013126 GO:0005524(InterPro)|GO:0009507(PANTHER)|GO:0140662(InterPro)
Clacu09g1007 922 FunFam Molecular chaperone DnaK 543 644 - -
Clacu09g1007 922 Pfam Hsp70 protein 45 639 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Clacu09g1007 922 MobiDBLite consensus disorder prediction 854 882 - -
Clacu09g1007 922 Gene3D - 543 643 IPR029048 -
Clacu09g1007 922 Gene3D - 46 415 - -
Clacu09g1007 922 FunFam Chaperone protein DnaK HSP70 414 597 - -
Clacu09g1007 922 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 416 541 IPR029047 -
Clacu09g1007 922 NCBIfam molecular chaperone DnaK 44 639 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Clacu09g1007 922 ProSitePatterns Heat shock hsp70 proteins family signature 2. 232 245 IPR018181 -
Clacu09g1007 922 FunFam U6 snRNA-associated Sm-like protein LSm4 774 856 - -
Clacu09g1007 922 PRINTS 70kDa heat shock protein signature 238 248 - -
Clacu09g1007 922 PRINTS 70kDa heat shock protein signature 401 421 - -
Clacu09g1007 922 PRINTS 70kDa heat shock protein signature 44 57 - -
Clacu09g1007 922 PRINTS 70kDa heat shock protein signature 179 199 - -
Clacu09g1007 922 PRINTS 70kDa heat shock protein signature 95 103 - -
Clacu09g1007 922 PRINTS 70kDa heat shock protein signature 505 521 - -
Clacu09g1007 922 PRINTS 70kDa heat shock protein signature 424 443 - -
Clacu09g1007 922 PRINTS 70kDa heat shock protein signature 72 84 - -
Clacu09g1007 922 PRINTS 70kDa heat shock protein signature 370 386 - -
Clacu09g1007 922 ProSiteProfiles Sm domain profile. 775 848 IPR047575 GO:0003723(InterPro)
Clacu09g1007 922 FunFam Molecular chaperone DnaK 46 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1058 Clacu-Chr6:18392862 Clacu09g1007 Clacu-Chr9:9554875 7.30E-304 dispersed
Clacu09g1007 Clacu-Chr9:9554875 Clacu10g0982 Clacu-Chr10:21172914 3.80E-183 dispersed
Clacu09g1007 Clacu-Chr9:9554875 Clacu09g2024 Clacu-Chr9:35046522 3.60E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1007 K03283 - csv:101212307 1212.59