Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1033 ATGATAAAGCAAGCGCACTCATTGATTCAAATTCCCAACGAAACCCAATTCATCGGATTCAAAAGCATTGGCAGAGTCAGATTCTGTTTGTCGATCCTTCAATCCTCCGCCTTCCAAATCAGACCGCTGGGGAATCTCACTTCCACACGTTCCCGCAACCACCATCGCCGGCCTCCCATGGCCGCCTCCGCCGCCGCGGATAACCCATCATCCACCTCTTCATCCTCCTCCAACCCTTTCATTTTCTCCCCCGATCCTCCCCCTAGACTTCCTCTCACACCCCATCAGATTAAGCTTTGTTCCGAAGCTCTTGAGGCCTTCAGGGAGAAGCTTCAGATGCCTGATGTCATCAACCAGGAGTTCGCCCGATTGCAGGCCAAGAGAATAACTGTATCTGATATGAAGAGAAGTTGCTCTGTGGCACTTGACAATGTCAACATAAATAAAAATCGTTACACGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGCAAGGATTACAGACCTTCCGCAAGGGGTTATATCAATGCAAGCTTTATTTCGACTTCCTCCTCAAAAAGCCTTTCTAAGTTTATTGCTACACAAGGTCCATTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATGGTAAAGTGTGGAGATTATTTTCAGGCTGAAGATGGTCCTAGAGATTTTGGTAATCTAATTGTTATCTCTAAATGGATAAAATCTTCCAACTCCTCTCTTATACTGCGCCATTTGGAGTTGAACCATAAAGAGTCGGAAGAATCTGTGTCTGTTCTACATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGCTGAAGAGGCTGTATCATTTACCTCCCGATCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGAAGAACCGGAACATATTGTGCAATTCATAACACAATTCAGAGAATCCTTGCTGGAGACATGTCTGCTTTAGATCTTGTCAATACCATTGCGACATTTAGGTCCCAGCGAATTGGAATGGTTCAAACACTGGATCAATACTTTTTCTGCTATAGAACTATTGTTGATGAACTAGAAGACCTTCTATCTGTTCCACAGTAG 1188 44.02 MIKQAHSLIQIPNETQFIGFKSIGRVRFCLSILQSSAFQIRPLGNLTSTRSRNHHRRPPMAASAAADNPSSTSSSSSNPFIFSPDPPPRLPLTPHQIKLCSEALEAFREKLQMPDVINQEFARLQAKRITVSDMKRSCSVALDNVNINKNRYTDVLPFDETRVVLDSCKDYRPSARGYINASFISTSSSKSLSKFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMVKCGDYFQAEDGPRDFGNLIVISKWIKSSNSSLILRHLELNHKESEESVSVLHIQYPEWPDHGVPNDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLVNTIATFRSQRIGMVQTLDQYFFCYRTIVDELEDLLSVPQ 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9832594 9838268 + ClG42_09g0103300.10 Clacu09g1033 257341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1033 395 SMART ptp_7 283 385 IPR003595 -
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 320 338 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 177 184 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 353 368 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 369 379 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 282 299 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 195 215 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 302 377 IPR000387 GO:0016311(InterPro)
Clacu09g1033 395 Gene3D Protein tyrosine phosphatase superfamily 93 392 IPR029021 -
Clacu09g1033 395 Pfam Protein-tyrosine phosphatase 146 384 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 ProSiteProfiles PTP type protein phosphatase domain profile. 117 386 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 SMART PTPc_3 116 388 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 MobiDBLite consensus disorder prediction 65 80 - -
Clacu09g1033 395 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 389 IPR029021 -
Clacu09g1033 395 CDD PTPc_plant_PTP1 178 380 - -
Clacu09g1033 395 MobiDBLite consensus disorder prediction 47 87 - -
Clacu09g1033 395 ProSitePatterns Tyrosine specific protein phosphatases active site. 323 333 IPR016130 GO:0016311(InterPro)
Clacu09g1033 395 FunFam Tyrosine-protein phosphatase non-receptor type 12 94 393 - -
Clacu09g1033 395 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 53 387 IPR050348 GO:0004725(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1033 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0667 . 116 685 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Clacu01g1774 . 117 671 Protein tyrosine phosphatase (PTP) family AT3G50110 59.2 3.6e-177 618.6
Clacu10g1527 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Clacu06g1324 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Clacu09g1033 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.4e-122 436.4
Clacu06g1933 . 252 1147 Protein tyrosine phosphatase (PTP) family AT5G23720 65.2 0.0e+00 1089.3
Clacu06g0577 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 58.0 2.6e-42 168.7
Clacu09g2109 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Clacu05g2338 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.1 6.1e-116 414.1
Clacu07g0502 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 7.4e-98 354.0
Clacu10g1408 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 1.6e-203 705.7
Clacu02g1854 . 93 294 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Clacu09g1115 . 25 231 Protein tyrosine phosphatase (PTP) family AT2G32960 64.0 9.8e-73 270.4
Clacu03g1046 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.2e-55 210.7
Clacu10g0242 . 69 401 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.9e-101 365.5
Clacu11g0342 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Clacu11g0342 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Clacu10g0242 . 105 280 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.9e-43 171.0
Clacu02g1854 . 127 295 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Clacu09g1115 . 34 232 Protein tyrosine phosphatase (PTP) family AT4G03960 63.8 2.3e-69 258.8
Clacu03g1046 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Clacu03g1046 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 4.2e-79 291.2
Clacu02g1854 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Clacu07g0292 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Clacu10g1527 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Clacu02g0667 . 82 685 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 3.3e-220 761.5
Clacu01g1774 . 115 671 Protein tyrosine phosphatase (PTP) family AT3G19420 58.2 4.8e-187 651.4
Clacu02g0667 . 116 685 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Clacu01g1774 . 117 671 Protein tyrosine phosphatase (PTP) family AT3G50110 59.2 3.6e-177 618.6
Clacu06g1324 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Clacu02g2250 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 7.9e-70 260.8
Clacu10g0180 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 1.1e-110 396.7
Clacu04g0781 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.3e-286 982.2
Clacu04g0781 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 1.9e-258 888.6
Clacu04g0781 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 3.9e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008867 1 2 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33