Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1033 ATGATAAAGCAAGCGCACTCATTGATTCAAATTCCCAACGAAACCCAATTCATCGGATTCAAAAGCATTGGCAGAGTCAGATTCTGTTTGTCGATCCTTCAATCCTCCGCCTTCCAAATCAGACCGCTGGGGAATCTCACTTCCACACGTTCCCGCAACCACCATCGCCGGCCTCCCATGGCCGCCTCCGCCGCCGCGGATAACCCATCATCCACCTCTTCATCCTCCTCCAACCCTTTCATTTTCTCCCCCGATCCTCCCCCTAGACTTCCTCTCACACCCCATCAGATTAAGCTTTGTTCCGAAGCTCTTGAGGCCTTCAGGGAGAAGCTTCAGATGCCTGATGTCATCAACCAGGAGTTCGCCCGATTGCAGGCCAAGAGAATAACTGTATCTGATATGAAGAGAAGTTGCTCTGTGGCACTTGACAATGTCAACATAAATAAAAATCGTTACACGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGCAAGGATTACAGACCTTCCGCAAGGGGTTATATCAATGCAAGCTTTATTTCGACTTCCTCCTCAAAAAGCCTTTCTAAGTTTATTGCTACACAAGGTCCATTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATGGTAAAGTGTGGAGATTATTTTCAGGCTGAAGATGGTCCTAGAGATTTTGGTAATCTAATTGTTATCTCTAAATGGATAAAATCTTCCAACTCCTCTCTTATACTGCGCCATTTGGAGTTGAACCATAAAGAGTCGGAAGAATCTGTGTCTGTTCTACATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGCTGAAGAGGCTGTATCATTTACCTCCCGATCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGAAGAACCGGAACATATTGTGCAATTCATAACACAATTCAGAGAATCCTTGCTGGAGACATGTCTGCTTTAGATCTTGTCAATACCATTGCGACATTTAGGTCCCAGCGAATTGGAATGGTTCAAACACTGGATCAATACTTTTTCTGCTATAGAACTATTGTTGATGAACTAGAAGACCTTCTATCTGTTCCACAGTAG 1188 44.02 MIKQAHSLIQIPNETQFIGFKSIGRVRFCLSILQSSAFQIRPLGNLTSTRSRNHHRRPPMAASAAADNPSSTSSSSSNPFIFSPDPPPRLPLTPHQIKLCSEALEAFREKLQMPDVINQEFARLQAKRITVSDMKRSCSVALDNVNINKNRYTDVLPFDETRVVLDSCKDYRPSARGYINASFISTSSSKSLSKFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMVKCGDYFQAEDGPRDFGNLIVISKWIKSSNSSLILRHLELNHKESEESVSVLHIQYPEWPDHGVPNDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLVNTIATFRSQRIGMVQTLDQYFFCYRTIVDELEDLLSVPQ 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9832594 9838268 + ClG42_09g0103300.10 Clacu09g1033 257341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1033 395 SMART ptp_7 283 385 IPR003595 -
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 320 338 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 177 184 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 353 368 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 369 379 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 282 299 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 PRINTS Protein tyrosine phosphatase signature 195 215 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 302 377 IPR000387 GO:0016311(InterPro)
Clacu09g1033 395 Gene3D Protein tyrosine phosphatase superfamily 93 392 IPR029021 -
Clacu09g1033 395 Pfam Protein-tyrosine phosphatase 146 384 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 ProSiteProfiles PTP type protein phosphatase domain profile. 117 386 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 SMART PTPc_3 116 388 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu09g1033 395 MobiDBLite consensus disorder prediction 65 80 - -
Clacu09g1033 395 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 389 IPR029021 -
Clacu09g1033 395 CDD PTPc_plant_PTP1 178 380 - -
Clacu09g1033 395 MobiDBLite consensus disorder prediction 47 87 - -
Clacu09g1033 395 ProSitePatterns Tyrosine specific protein phosphatases active site. 323 333 IPR016130 GO:0016311(InterPro)
Clacu09g1033 395 FunFam Tyrosine-protein phosphatase non-receptor type 12 94 393 - -
Clacu09g1033 395 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 53 387 IPR050348 GO:0004725(PANTHER)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1033 - - - 0.0