Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1037 ATGGATCCTGAAGATAGTTTGTGTAGCTCTGAAGTTTGGACAAAATCTTCTTTTCCTAATAATAATATTCAGCAACCAGCACAAAAATGGGCAGATGCTTCCATTTTAGACTATGCTATGGAACAACCTTTCCAAGAATTTGAAGAACGGACTGAATCGAAGGCCTCCCTAAGCTGTAACCCGAATCAACAAATTGAAATCCTTGATAAAGATAGTAATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGATCCGAGGGCAATGCTAAATAATCTTTCTTTCCTTGAGCAGAAGATTCATCAGCTTCAGGAACTTGTGCATTTGATCGTTGGTCGGAGGAGCCAAGTCTTCGGGAGGCCAGATGAACTTGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGTTAATCTCGACGGCTGGTAGTCTGCTTCCATCTGTAAAGCATAACTTGTCTGCTGCTGTTCCTGCAGTCGGGCAGCTGGAGCAGCTCGACAAAGTTCTTTTCGCGTCTGGACCCGGGACTGATAATGGTGGTGTTCAGTCACAACATGGTGATGGAACCAAACTCCCCGAGCTTCCAACCCAAGTGGACGGAAGTAGCAAGTGTGGGAAAGAACAGAACATGACTGTTGAAGAACACGAATCAAAGGATGAAGAAGACGCAGATGATAATGAGAACCTTCCACCCGGTTCGTATGAAATATTGCAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGAGATGCAAATCTACGAATGCACATGAGGGGTCATGGTGACGAGTATAAAACTGCAGCTGCCCTTGCAAAGCCGAACAAAGAAATGGGTTCCGAGACCATGCTAATTAAGAGGTATTCCTGCCCCTTCACCGGCTGCAAGCGTAACAAGGATCATAAGAAGTTTCAGCCTTTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCATTGTGGGAAAGATAAATGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGATGAGTCAAAGGGAGCAGTCATGTCCTGTGATCGAGGAGAACGCTATGAAACAATGAATAAGCTTGGGAGCATAAATTTCAGTTTCGGGTCGGTTGCTTCAGGAGGAAGCTCAGTTGAAACCATAGGAGATGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCACCTCTGAACTTCGATTCATGTAATTTTGGTGGCTTTCATGAGTTTCCTCGACCGCCATTCGAAAACACAGACAATGCATTTTCGTTCCTTATCCCGGCATCTAGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTTGA 1527 43.48 MDPEDSLCSSEVWTKSSFPNNNIQQPAQKWADASILDYAMEQPFQEFEERTESKASLSCNPNQQIEILDKDSNQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVFGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPAVGQLEQLDKVLFASGPGTDNGGVQSQHGDGTKLPELPTQVDGSSKCGKEQNMTVEEHESKDEEDADDNENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEMGSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAVMSCDRGERYETMNKLGSINFSFGSVASGGSSVETIGDAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTDNAFSFLIPASSNYTQKSGAESSS 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9876135 9877661 - ClG42_09g0103700.10 Clacu09g1037 257345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1037 508 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 64 491 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Clacu09g1037 508 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Clacu09g1037 508 SUPERFAMILY beta-beta-alpha zinc fingers 257 285 IPR036236 -
Clacu09g1037 508 Gene3D Classic Zinc Finger 243 314 - -
Clacu09g1037 508 SMART c2h2final6 308 341 IPR013087 -
Clacu09g1037 508 SMART c2h2final6 346 368 IPR013087 -
Clacu09g1037 508 SMART c2h2final6 259 281 IPR013087 -
Clacu09g1037 508 MobiDBLite consensus disorder prediction 182 241 - -
Clacu09g1037 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1436 Clacu-Chr1:26234378 Clacu09g1037 Clacu-Chr9:9876135 1.60E-60 dispersed
Clacu01g1940 Clacu-Chr1:31464790 Clacu09g1037 Clacu-Chr9:9876135 9.20E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48334 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1037 - - - 0.0