Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1065 ATGGGTGATCTCGAAACTCGAAGAATTAGAAATATATGTATATTAGCACACGTCGATCATGGCAAAACGACACTTGCTGACCATCTTATCGCCTCCTCGGGAGGCGGTTTGATCCACCCAAAGATGGCGGGCCGCCTCCGTTTCATGGATTATCTTGATGAGGAACAAAGGCGGGCGATTACTATGAAGAGCTCATCGATTGGTCTACGGTACAAGGAATACTCTATCAATCTCATTGATTCGCCTGGCCATATGGATTTTTGTAGCGAAGTGTCGACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCTGTGGAGGGTGTGCACATTCAAACCCATGCTGTCTTGCGACAGGCTTGGATTGAGAAGCTTACGCCCTGTTTGGTTCTTAATAAGATTGATAGGTTGATATGTGAGTTGAAGTTGAGTCCTATGGAAGCATATACTCGTTTGTTGAGGATTGTTCATGAAGTTAATGGGATAATGAGTGCATACAAGTCTGAGAAATATTTGACCGATGTAGATTCAATACTTGCAGGTTCTTCAGGTGAGGTGAATGACGAGAATCTCGAGTTTATAGAGGATGACGAAGAAGATACATTTCAACCGCAGAAAGGGAATGTGGTGTTTGTGTGTGCTTTAGATGGGTGGGGTTTTGGCATTAACGAATTTGCTGAGTTTTATGCTTCAAAGCTTGGGGCCAATGTATCTGCATTGAAGAAGGCCTTGTGGGGTCCACGGTATTTTAATCCAAAGACCAAGATGATTGTTGGAAAGAAGGCCATGGCTGGAGGAAGTAAAGCACGGCCTATGTTTGTTCAATTTGTGCTTGAAAGACTTTGGGATGTTTATGAGGCTGCTTTAGAAAGTGATGGGAATAAGGAGGTACTTCAAAAGGTTAATAGTACATTTAATTTGAATATACCAGCTCGAGAACTTTCTAACAAGGATCCAAAGGTGGTTCTTCAAGCTATTATGAGTCGTTGGCTTCCTCTTTCAGATACAATATTGTCAATGGTCGTAAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCAAGGTTGCTTCCGAAGAGGGATATAGTTGATACCGGAGTTGACGTCAATGTACTAACTGAAGCAGATCTTGTCAAGAAATCCATTGAAGCTTGTGATTCAAGGCCTGAAGCTCCATTTGTTGCTTTTGTGTCCAAGATGTTTGCAGTTCCACTTAAAATGCTTCCACGGAGGGAAAATCATGGTGAGACTACTAATATTTCAGCTGAAGATGGTGGAGATGGTGAATCAGACGAGTGTTTCCTTGCATTTGCAAGGGTATTTAGTGGGGTTCTTTATTCTGGACAGAGAGTGTTTGTGCTTTCAGCCTTATATGACCCAACCAAAGGGGAATCAATGCACAAACACATTCAGGAGGCTGAATTGCATTCATTTTATCTCATGATGGGCCAAGGCTTGAAACCAGTGACCTCAGTAAAAGCAGGAAACCTTGTTGCAATTCGTGGTCTTGGCCATCACATATTGAAAAGTGCAACTCTTTCATCCACTAGAAATTGCTGGCCTTTCTCAAGTATGGTGTTCCAGGTTGCACCAACACTTAGAGTTGCACTTGAGCCATCTGATCCTGGAGATATAGGTGCATTGTTGAAAGGCTTAAGGCTTTTAAATCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCAGCAAGAGGAGAACATGTTCTTGCTGCAGCAGGAGAAGTTCATCTCGAGAGATGCATAAAGGATTTGAAGGATAGGTTTGCCAGGGTAAGCTTGGAAGTCTCTCCACCTCTTGTATCGTATAAAGAGACAATTGAAGGAGAGGCATCTAGTGTGTTGGATTATTTTAAGGTGTTGTCTGAAAGCACAGATTGTGTTACTAAGAAAACCCCAAATGGTAGATGTATCGTCAGAGTGCAGGTACTGAAACTTCCACCTGCTCTTGCTAAAGTACTTGATGAAAATTCTGATGTATTGGGAGATATTATTGGAGTCAAGTTGGGGCAGAACTATAAAAACTTGGAAACAAAGAGATCAAATCTGAGAGAGAATGATAATCCAACAGAAGCAGTAAAAAAACTAATAGCAGATGCAGTATGTAGTAATGTATCTTCAAAGGATGACCATGAAGGTAGTCGGGCTGACAAACACAATGCGCTGTGGTCGAAGCTTCTTAAGCGATTTTGGGCACTTGGACCACAGCAGATTGGTCCTAACATTCTGATTAACCCAGATCCGAAAGTAAAGGATCCTGATGGCTCTGTTCTTATTCGAGGCTCGCCTCATGCATCACAGAGATTGGGTTTTGTGGATGATTCCTTAAATGCTAGCTTGGATCCTGAAACATCTTTGGTAGGCGATATGATTTCTGCAGCATCTCCAGAAGGAACTCAGACATTATGCATGGAAGCAGCATCTCTTGAGAACAGCGTTTTATCTGGGTTTCAGCTTGCTACATCAGCTGGGCCCTTGTGTGATGAACCTATGTGGGGGTTGGCATTTCTTGTTGAGGCCTCTATATCTTCGCTGTCTGGGAATTCAGATGAATCTGAATCTCCCTTTCAACCAGAGAACAACGCTGTCTTTTCTGGTCAAGTTATGGCAGCTGTAAAGGATGCCTGTAGAGCAGCTGTACTTCATAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAATTGAATACTCCCACTGAGTATTTGGGTCCAATGTATGCTGTACTTGCACGAAGGCGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACTGTGCATGCGTATGTGCCAGTTTCAGAAAGCTTTGGTTTTGCAGATGAGTTAAGGAGATGGACTTCCGGAGCAGCAAGTGCTCTTCTAGTGCTTAGCCATTGGGAAGAACTATGTGAAGATCCTTTTTTTATTCCCAAGACGGAAGAAGAAATAGAAGAGTTTGGAGATGGTTCTAGCGTGCTTCCCAACACAGCAAGAAAGCTTATTGATACAGTAAGACGACGTAAGGGTCTTCCAGTGGAAGAAAAAGTTGTACAACATGCAACAAAGCAGAGAACTTTGGCTCGGAAAGTATAA 3114 42.77 MGDLETRRIRNICILAHVDHGKTTLADHLIASSGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLTDVDSILAGSSGEVNDENLEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAEFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWDVYEAALESDGNKEVLQKVNSTFNLNIPARELSNKDPKVVLQAIMSRWLPLSDTILSMVVNCMPDPIAAQSFRISRLLPKRDIVDTGVDVNVLTEADLVKKSIEACDSRPEAPFVAFVSKMFAVPLKMLPRRENHGETTNISAEDGGDGESDECFLAFARVFSGVLYSGQRVFVLSALYDPTKGESMHKHIQEAELHSFYLMMGQGLKPVTSVKAGNLVAIRGLGHHILKSATLSSTRNCWPFSSMVFQVAPTLRVALEPSDPGDIGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFARVSLEVSPPLVSYKETIEGEASSVLDYFKVLSESTDCVTKKTPNGRCIVRVQVLKLPPALAKVLDENSDVLGDIIGVKLGQNYKNLETKRSNLRENDNPTEAVKKLIADAVCSNVSSKDDHEGSRADKHNALWSKLLKRFWALGPQQIGPNILINPDPKVKDPDGSVLIRGSPHASQRLGFVDDSLNASLDPETSLVGDMISAASPEGTQTLCMEAASLENSVLSGFQLATSAGPLCDEPMWGLAFLVEASISSLSGNSDESESPFQPENNAVFSGQVMAAVKDACRAAVLHKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFIPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEEKVVQHATKQRTLARKV 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10117686 10120799 - ClG42_09g0106500.10 Clacu09g1065 257373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1065 1037 SUPERFAMILY Translation proteins 388 530 IPR009000 -
Clacu09g1065 1037 Gene3D - 631 892 IPR014721 -
Clacu09g1065 1037 FunFam Translation elongation factor 2 535 611 - -
Clacu09g1065 1037 FunFam Elongation factor 2-like protein 2 212 - -
Clacu09g1065 1037 NCBIfam small GTP-binding protein domain 9 138 IPR005225 GO:0005525(InterPro)
Clacu09g1065 1037 SUPERFAMILY EF-G C-terminal domain-like 898 996 IPR035647 -
Clacu09g1065 1037 Pfam Elongation factor G C-terminus 895 979 IPR000640 -
Clacu09g1065 1037 CDD EF2 10 232 - -
Clacu09g1065 1037 Gene3D Yeast translation eEF2 (G' domain) 224 333 - -
Clacu09g1065 1037 Gene3D - 894 1029 - -
Clacu09g1065 1037 CDD aeEF2_snRNP_like_IV 607 902 - -
Clacu09g1065 1037 Gene3D - 3 210 IPR027417 -
Clacu09g1065 1037 SMART EFG_C_a 895 984 IPR000640 -
Clacu09g1065 1037 Gene3D Elongation Factor G (Translational Gtpase), domain 3 535 611 - -
Clacu09g1065 1037 FunFam Elongation factor like GTPase 1 224 333 - -
Clacu09g1065 1037 Pfam Elongation factor Tu GTP binding domain 8 223 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1065 1037 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1065 1037 PRINTS GTP-binding elongation factor signature 93 104 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1065 1037 PRINTS GTP-binding elongation factor signature 11 24 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1065 1037 PRINTS GTP-binding elongation factor signature 57 65 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1065 1037 PRINTS GTP-binding elongation factor signature 77 87 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1065 1037 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 6 1034 - GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0042256(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Clacu09g1065 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 348 IPR027417 -
Clacu09g1065 1037 CDD eEF2_snRNP_like_C 898 976 - -
Clacu09g1065 1037 CDD EF2_II 397 521 - -
Clacu09g1065 1037 CDD EF2_snRNP_III 536 607 - -
Clacu09g1065 1037 Gene3D Translation factors 350 533 - -
Clacu09g1065 1037 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 7 239 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1065 1037 SUPERFAMILY Ribosomal protein S5 domain 2-like 610 897 IPR020568 -
Clacu09g1065 1037 SUPERFAMILY EF-G C-terminal domain-like 533 608 IPR035647 -
Clacu09g1065 1037 FunFam Elongation factor like GTPase 1 894 1029 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1895 Clacu-Chr2:32446971 Clacu09g1065 Clacu-Chr9:10117686 4.00E-115 dispersed
Clacu09g1065 Clacu-Chr9:10117686 Clacu10g1651 Clacu-Chr10:29915385 2.70E-20 dispersed
Clacu11g1808 Clacu-Chr11:29240449 Clacu09g1065 Clacu-Chr9:10117686 8.20E-06 dispersed
Clacu09g1065 Clacu-Chr9:10117686 Clacu02g1878 Clacu-Chr2:32268201 1.50E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1065 K14536 - csv:101220903 1937.15