Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1069 ATGAGTTGGTTTCAATGTTGCATGTCAGAGGAGAGAGTTAATAGAAATGCTTTGAAAAAGAGCATTATGGAATACCATGACACAAAAACTTTAGCCTCATTTGCCAATCTTTCCTTCAAGTCTGGTAACAATAGAGGAAGGTACACAAATAAGGAGTTAAAGAGGTTACGAAAAGGGAACATTTTAGCTCAAACCTTTACATTCCGTGAGCTATGTGTTGCAACAAATAACTTCAACAACAAAAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAAGCCCTCATTGAAAGCACAAAACAAGTAACGGCCGTGAAGCGACTTGATCCAAATGGATTTCAAGGGAACAGAGAATTTCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCCAATCTAGTCAATTTGGTTGGGTATTGTGCTGATGCAAATCAAAGGATTTTGGTTTATGAGTATATGGCTAATGGCCCATCAACACTTCAACAATGTTTTATTTCAGAAGATGGCATTTCAGATACAGCTTCAAATAAGCCACCTCTAGATTGGAACACAAGGATGAAAATCGTCAAAGGAATCGCAAGAGGACTCGAATACTTACACGAAACCGTCAGTCTTCCCGTGATATACCGCGACTTTAAAGCTTCAAACATATTGTTGGATGAAGAATTCAATGCAAAGCTCTCTGATTTTGGTCTTGCAAAGATAGGTCCCATTGGAGATCAATCTCATGTTTCCACAAGAGTGATGGGAACTTATGGTTATTGTGCTCCTGAATATGCACTTACAGGACAATTGTCCACCAAATCCGATGTCTACGGTTTCGGCGTCGTCTTCTTGGAGATAATCACAGGAAGACGAGTTATTGACAACACAAAACCAACTGGACAAAAAAATTTAATTTCTTGGGCACAACCACTTTTCAAAGACAGAAGGAAATTCACACTAATGGCAGATCCAAAGCTAGAAGGAAATTACCCAGTGAAGGCTCTTTATCAAGCTCTAGCAGTGGTAGCCATGTGTTTGCAAGAGGAAGCAAATACTCGGCCATTGATTAGCGACGTGGTTACAGCGCTTCAATATTTAGCTGTGAGTGACAAGAATGTCGATGAAGACGTAGATGACGAATCAGATTCGGAGTCGGTATCTGAATCGGAATTAAGTTGTTCATATTCATGTTCAACTTCTCCTGATAGAAGAAGTGATATTGGAGGTAAAAATGTTGGTGTTGAAGGTGATGGGAGAGGAGAGTGGGCACGAATCACCACCCGTGGATTCTCATTCATTCTACCCAACTCCCATGTTCTTCAGATTCAATTCCCTTTCTTAATCGCCATGAAAAGACGGACTTTGCTCAAGGTCATCGTTCTCGGTGATAGTGGGGTTGGTAAGACGTCGTTGATGAACCAATACGTGCATAAGAAGTTCAGCCAGCAATATAAAGCTACAATTGGTGCAGATTTTGTCACCAAGGAACTTCAAATTGACGATAGGCTTGTCACACTTCAAATATGGGATACAGCCGGACAAGAAAGATTTCAAAGTCTTGGAGTTGCATTCTATAGAGGGGCAGATTGCTGTGTTCTAGTCTATGATGTTAACGTGATGAAGTCATTTGACACACTTGATACTTGGCACGATGAGTTTCTTAGACAGTTCTACAGTAATGGTTTCAGAGGAAGGGAAGGGGCTTTTTGGGTTGTACCCTGCATCCTCATTTTTTCCTTCTCATTCAAAAAGTGTTGTTTTATTTGCGTTGCTCTGGCAAACCCACCTGACCCTAGGACGTTTCCGTTTATTTTGCTTGGAAATAAGATCGACATTGATGGTGGGAATAGTCGAGTGGTCTCTGAGAAGAAAGCTAGGGAATGGTGTGCTTCAAAAGAAAATATTCCCTACTTCGAGACATCAGCTAAAGAGGACTACAACGTCGATGCTGCTTTTTTATGCATTGCCAAGACTGCATTAGCCAATGAACATGAGCAGGATATATATTTCCAAGGAATCCCCGAAACCGTCGTGGAGACTGAGCAAAGAGGTGGCTGCGCATGCTGA 2058 41.3 MSWFQCCMSEERVNRNALKKSIMEYHDTKTLASFANLSFKSGNNRGRYTNKELKRLRKGNILAQTFTFRELCVATNNFNNKNLLGEGGFGRVYKALIESTKQVTAVKRLDPNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADANQRILVYEYMANGPSTLQQCFISEDGISDTASNKPPLDWNTRMKIVKGIARGLEYLHETVSLPVIYRDFKASNILLDEEFNAKLSDFGLAKIGPIGDQSHVSTRVMGTYGYCAPEYALTGQLSTKSDVYGFGVVFLEIITGRRVIDNTKPTGQKNLISWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVVAMCLQEEANTRPLISDVVTALQYLAVSDKNVDEDVDDESDSESVSESELSCSYSCSTSPDRRSDIGGKNVGVEGDGRGEWARITTRGFSFILPNSHVLQIQFPFLIAMKRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDTWHDEFLRQFYSNGFRGREGAFWVVPCILIFSFSFKKCCFICVALANPPDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKENIPYFETSAKEDYNVDAAFLCIAKTALANEHEQDIYFQGIPETVVETEQRGGCAC 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10154840 10167785 - ClG42_09g0106900.10 Clacu09g1069 257377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1069 685 MobiDBLite consensus disorder prediction 371 408 - -
Clacu09g1069 685 ProSiteProfiles small GTPase Ras family profile. 447 685 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1069 685 FunFam probable serine/threonine-protein kinase RLCKVII 50 154 - -
Clacu09g1069 685 CDD STKc_IRAK 84 361 - -
Clacu09g1069 685 Gene3D - 446 669 IPR027417 -
Clacu09g1069 685 PRINTS Transforming protein P21 ras signature 634 656 - -
Clacu09g1069 685 PRINTS Transforming protein P21 ras signature 453 474 - -
Clacu09g1069 685 PRINTS Transforming protein P21 ras signature 494 516 - -
Clacu09g1069 685 PRINTS Transforming protein P21 ras signature 476 492 - -
Clacu09g1069 685 PANTHER OS07G0668900 PROTEIN 43 382 - -
Clacu09g1069 685 SMART rab_sub_5 453 659 - -
Clacu09g1069 685 Pfam Ras family 454 554 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1069 685 Pfam Ras family 594 656 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1069 685 SMART rho_sub_3 455 659 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu09g1069 685 MobiDBLite consensus disorder prediction 384 402 - -
Clacu09g1069 685 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524(InterPro)
Clacu09g1069 685 NCBIfam small GTP-binding protein domain 453 548 IPR005225 GO:0005525(InterPro)
Clacu09g1069 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1069 685 Gene3D Phosphorylase Kinase; domain 1 40 154 - -
Clacu09g1069 685 ProSiteProfiles Protein kinase domain profile. 78 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1069 685 SMART ran_sub_2 458 685 - -
Clacu09g1069 685 ProSiteProfiles small GTPase Rab1 family profile. 448 685 - -
Clacu09g1069 685 SUPERFAMILY Protein kinase-like (PK-like) 63 358 IPR011009 -
Clacu09g1069 685 FunFam Serine/threonine-protein kinase PBS1 166 379 - -
Clacu09g1069 685 ProSiteProfiles small GTPase Rho family profile. 445 661 - -
Clacu09g1069 685 SMART ras_sub_4 450 659 - -
Clacu09g1069 685 Pfam Protein kinase domain 79 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1069 685 FunFam Ras-related protein Rab-1B 446 560 - -
Clacu09g1069 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 663 IPR027417 -
Clacu09g1069 685 CDD Rab7 453 662 - -
Clacu09g1069 685 Gene3D Transferase(Phosphotransferase) domain 1 169 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0104 Clacu-Chr2:1129486 Clacu09g1069 Clacu-Chr9:10154840 3.80E-83 dispersed
Clacu05g1607 Clacu-Chr5:23119102 Clacu09g1069 Clacu-Chr9:10154840 6.10E-06 dispersed
Clacu09g0202 Clacu-Chr9:1896319 Clacu09g1069 Clacu-Chr9:10154840 1.70E-83 dispersed
Clacu09g1069 Clacu-Chr9:10154840 Clacu10g0535 Clacu-Chr10:6437837 4.50E-165 dispersed
Clacu11g0805 Clacu-Chr11:7965318 Clacu09g1069 Clacu-Chr9:10154840 7.10E-24 dispersed
Clacu11g1957 Clacu-Chr11:30549033 Clacu09g1069 Clacu-Chr9:10154840 3.40E-26 dispersed
Clacu09g1069 Clacu-Chr9:10154840 Clacu05g0679 Clacu-Chr5:5690129 7.70E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73827 PF00069 Pkinase 3.40E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1069 - - - 0.0