Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1079 ATGTTTGTGATTTCTTGTTTTGAGTTTACCATGTTGAGGTTGTTGGTTATTGAGTTTAAGGAGCAGCTAGTTTTGGATAAAGCACTTCGCTTCCTCGTCGATGCTTCGAAGACGATCGCTTTCGCTTTCTTCCTATCTCTTCTCGCTCTAGTTGGTGCGTCGGTGGGGACAGTGATCGGAGCTTTCAAAGGCCATGGTGTGGCCATAGGCGCTATTGCCGGCGCCGCCGTAGTCCTTCAGATATTGAGCTGCACTGCATCTGGGCATAGATATTCTTTATCAAAGGAAGCAATAATGGAGAGGCTGATGGATGGGAAGGGGTTGATGAACTGGGCGAGCAGCTTCTCGGAGTATATGTATCGAGAGATATCGGAGTTGGTCGACGTCGCCGGAGAAAGTTGTGTAGAAGGGATGTCAATGGAGAGAGTTCAAATGTTGCCTATTTGTGAATGTGATCATAGCAAGATGAACAACTCCATTTCTTGTACCATTTGCTTAGAGGAATTTGAAGATGGAGAATTTGGTACAATTCTTAGAAGGGTTATTCCATCAGACAACAGTTGCCTCTTCAATGCTGTTGGGTATGTTATGGACCATGATAAACACAAGGCTACCGAGTTACGACAGGTCATAGCTGCAACAGTAGCTAGTGATCCAACAAGGTATTCTGAAGCATTTCTTGGAAAGCCAAATGAGGAGTATTGTTCTTGGATTCTTAATTCAGAGAAGTGGGGAGGTGCAATCGAGCTTTCAATACTATCCGAATATTATGGGCGTGAAATAGCAGCATATGATATCCAGACCACACGATGTGACTTGTACGGTCAGGAAAAGAATTATTCAGAAAGGGTTCTGCTAATATATGATGGACTCCACTATGATGCTTTAGTTATGTCTCCATCTGAGGAAGCTCCAGAGGAATTTGATCAGACCATCTTTTCGGTGAATAGAGACAGGACGATTGGGCCGATTGAGGAGCAAGCTCTTCATTTTGTTAAAGAGCAACAAAGGAAAAGGAGATTCACTGACACTGCCAACTTCACGCTGCGCTGTGGGGTTTGCCAAATTGGAGTCATTGGCCAAGCGGAGGCTGTGGAACACGCAAAAGCCACTGGACATGTCAACTTTCAAGAGTATAGATGA 1143 44.53 MFVISCFEFTMLRLLVIEFKEQLVLDKALRFLVDASKTIAFAFFLSLLALVGASVGTVIGAFKGHGVAIGAIAGAAVVLQILSCTASGHRYSLSKEAIMERLMDGKGLMNWASSFSEYMYREISELVDVAGESCVEGMSMERVQMLPICECDHSKMNNSISCTICLEEFEDGEFGTILRRVIPSDNSCLFNAVGYVMDHDKHKATELRQVIAATVASDPTRYSEAFLGKPNEEYCSWILNSEKWGGAIELSILSEYYGREIAAYDIQTTRCDLYGQEKNYSERVLLIYDGLHYDALVMSPSEEAPEEFDQTIFSVNRDRTIGPIEEQALHFVKEQQRKRRFTDTANFTLRCGVCQIGVIGQAEAVEHAKATGHVNFQEYR 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10234013 10242881 - ClG42_09g0107900.10 Clacu09g1079 257387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1079 380 SUPERFAMILY Cysteine proteinases 179 297 IPR038765 -
Clacu09g1079 380 Pfam OTU-like cysteine protease 183 279 IPR003323 -
Clacu09g1079 380 CDD OTU_plant_OTU1_2-like 175 338 - -
Clacu09g1079 380 ProSiteProfiles OTU domain profile. 177 299 IPR003323 -
Clacu09g1079 380 FunFam ubiquitin thioesterase OTU1 173 345 - -
Clacu09g1079 380 Gene3D - 166 345 - -
Clacu09g1079 380 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 169 378 - GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)|GO:0030433(PANTHER)|GO:0030968(PANTHER)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1079 K13719 - csv:101222942 405.601