Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1080 ATGGTTGAATTAGACTACCAGATCCCATCCGCATTTGATCCATTCGCCGAAGCCAAGGATTCGGATGCCCCCGGAACCAAAGAGTATGTTCATATTCGCGTCCAACAAAGGAATGGGAAGAAGTGCTTGACTACAGTCCAAGGTCTGAAGAAAGAGTTTAGCTACGAGAAGATTCTCAAAGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTGCAAGACAAAGAATTGGGGAAGATAATTCAACTTCAAGGCGATCAGCGTAAGAACGTCTCTCAGTTTCTTGTTCATGCTGGTCTGGTCAAGAAGGATCAGATCAAGATTCATGGGTTTTGA 339 43.95 MVELDYQIPSAFDPFAEAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVHAGLVKKDQIKIHGF 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10254417 10254755 - ClG42_09g0108000.10 Clacu09g1080 257388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1080 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu09g1080 112 FunFam Eukaryotic translation initiation factor SUI1 2 112 - -
Clacu09g1080 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu09g1080 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743(InterPro)
Clacu09g1080 112 Gene3D - 2 112 - -
Clacu09g1080 112 NCBIfam translation initiation factor SUI1 7 112 IPR005874 GO:0003743(InterPro)
Clacu09g1080 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743(InterPro)
Clacu09g1080 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu09g1080 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - GO:0003723(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0187 Clacu-Chr2:1750319 Clacu09g1080 Clacu-Chr9:10254417 2.90E-38 dispersed
Clacu09g1080 Clacu-Chr9:10254417 Clacu10g0518 Clacu-Chr10:6273653 9.50E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1080 K03113 - csv:101202908 224.172