Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1090 ATGGACTGGACCAGAGGCCCTGCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATTTGGCCACAGCCGCCTCCTCCTGCCACCAATTCGCCGTCAAATCCTCCAACCTCACTTCATCGGCGCTGTTGCAGAAGGAGCACGCTCTTCTTTCCAATTTGAGCTCCCCATATCTAATCAAGTGCTTAGGTTTCGACATTGAAACCGAAGCCTTGAATCCGCCGGTGTTCAATTTGTTCATGGAGTATTTGCCGGAGGGGACACTGTGGGATGCGATACAGAGCAACGGCGGTCGGATGGAGGAATCGACGATCGGAGTATTTTCGCGTCAGATTCTCAAAGGATTGGAGTACCTTCACGCTAATGGATTAGCACATTGCGATATCAAGAGCCGAAATCTGTTATTGAGTGATGAGGGTTTGAAAATCGCCGATCTCGGTTGTGCGAAATTTGTGGATGAAATTTCCGGTAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCGCCCGAGGTTGCGAGAGGTGAAGAACAGGGGTTTCCGGCGGATGTTTGGGCTTTTGGATGCACAGTCATTGAAATGGCTACTGGCGATCATCCATGGCCGGAAATGGAGGATCCGGTATCGGCGTTGTATCGGATTGGATTTTCCGGCGACTTACCGGAGATCCCGCGGTGGTTGTCGAAGGGTGCGAGGGATTTTGTCGCCAAGTGTTTGATAAAAGACCCGAAAGAAAGATGGACTGTGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTGAATCGGAGATTGAATGCTCGAGGATGAAAACGATGAATTCTTCTCCGAACTGTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGGTGACCCATCAAGCTTCTATGGCGGGTTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCTTCTGATTGGGATTTGGAATGGGATGATCGGGATTGGGTTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATATTTTTGCCTCAGTTGAAGAAGAAGAAATTTTGAACTTGGAATTTGAAGAAAATTCTGTATTGTTCTGTTTAGTTGATAATGATTTTAGTGTTGTGAAGAGTGGGAATGGAGGATTAGAAATGGAATTTGAGAGTGATTTTATGTTGGAAACTGTGAGATCTGAAGTTGAAAATCGAACGCCGCTACGCCGGAGCTTTCTTCTTGGAGCAATTGCCCAATTCAAAGCTCCAAATCTCCGTCCACACTTCGCGGCTAGAGTTCGGGCCGGCAGTGTAGTTTCAGAGATTGTAATGGAAGCGCCGCCGTTCTCCATCGCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCAGTCTGTATTTCGATCACTTTCGTCGTTGTCTTATACCAGCTCCCTCATTTGTCTTCGCAACAATCGTTACAAAGGTCGTCATCTCAAAGTCAAGTGCTCCGGTAAGTTCGCAGTTCGTGCCTCATTTGGTGGTGACTCAGTTGTGACTTTACTGGATTACGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTCGACATCAAAGATGTGCAAACTCCAGAAGACATTCTAAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCTGCCATGGATGTGCTAAACAGTAAAGGCATGGCTGAAGCACTTTGCACTTATATTGAGAATGATCGCCCATTTTTAGGCATCTGTCTTGGGCTTCAACTACTCTTTGAGTCAAGCGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCTGGTGTGGTTGGACGTTTTGACTCTTCCAATGGCTTTAGGGTACCCCATATTGGGTGGAATGCTTTGGAAATCTCAGAGGACTCTGAGATATTGGATGAAATTTCTAACCGTCATGTCTACTTTGTTCACTCTTACCGTGCTATGCCATCAGACAAGAACAAGGATTGGATCTCTTCTACTTGCAGCTATGGTGACAGGTTTATAGCTTCAGTTAGAAGGGGAAATGTTCATGCAGTTCAATTCCACCCAGAAAAAAGTGGAGATGTAGGTCTGTCTGTCCTACGAAGATTCCTGTTTCCAAAGTTGTCTGTGACGAAGAAGCCTACTGAGGGAAAGGCATCAAGGCTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGCGGACAAATGACCAAGGGGACCTTGTTGTTACCAAAGGGGACCAATATGATGTAAGGGAGCAGACAGAAGAGAATGAGGTGAGGAACCTTGGCAAGCCGGTAGAGCTTGCTGGACAGTACTACAAGGATGGTGCTGATGAGGTCAGTTTTCTGAATATAACCGGTTTCCGTGACTTCCCTCTTGGCGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGGGGCGGGATTAGAGATTTTAAGGATGCAAATGGCAGACACTATTCTAGCTTGGAAGTTGCTTCAGAATATTTTAGATCTGGAGCTGATAAAATATCTATTGGAAGTGATGCAGTTTATGCTGCCGAAGAATATTTAAGAACTGGCGTAAAGACCGGAAAGAGCAGCTTGGAGCAGATTTCTAAGGTTTATGGAAACCAGGCTGTTGTGGTAAGTATTGATCCTCGTAGAGTGTACCTTAAAAGTCCCAATGATGTGGAGTTCAAAGTCATACGAGTAACAAACCCAGGTCCTAATGGAGAAGAGTATGCATGGTATCAATGTACAGTAAATGGAGGTCGAGAAGGTCGACCTATTGGCGCTTTTGAGCTTGCAAAAGCAGTTGAGGAGCTTGGAGCTGGAGAAATACTGCTGAACTGCATAGATTGTGATGAAATTCCTCAAGGAATGTCCAGTGAGGAAGTTAACAAGAGGCCTGCCATCCACTCGGTCATAGTTATAGAACCTGTATGTATGGAGTGGACTAGGAGTGAAAGGGATATAACACTGTTCCTTTTGAGAATTGACCTGCATGGATTCAAAGCTTCGCATCTTGACGGAATAGCCTTGAAAACTACCGAAAGTAGTTTCACTGTGTATGAAGAGAAGAACGGCT 3154 45.78 MDWTRGPAVGRGSSATVYLATAASSCHQFAVKSSNLTSSALLQKEHALLSNLSSPYLIKCLGFDIETEALNPPVFNLFMEYLPEGTLWDAIQSNGGRMEESTIGVFSRQILKGLEYLHANGLAHCDIKSRNLLLSDEGLKIADLGCAKFVDEISGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSGDLPEIPRWLSKGARDFVAKCLIKDPKERWTVKRLLEHPFLQGFDSESEIECSRMKTMNSSPNCVLDQSFWDSMEDLETPLKVTHQASMAGCPAERIRSLAGNLSSDWDLEWDDRDWVLIRNNGVGGGSHGNGSVSSDIFASVEEEEILNLEFEENSVLFCLVDNDFSVVKSGNGGLEMEFESDFMLETVRSEVENRTPLRRSFLLGAIAQFKAPNLRPHFAARVRAGSVVSEIVMEAPPFSIAVSSSSSSSSSSSSSQSVFRSLSSLSYTSSLICLRNNRYKGRHLKVKCSGKFAVRASFGGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNSKGMAEALCTYIENDRPFLGICLGLQLLFESSEENGPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISEDSEILDEISNRHVYFVHSYRAMPSDKNKDWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLFPKLSVTKKPTEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKSSLEQISKVYGNQAVVVSIDPRRVYLKSPNDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAFELAKAVEELGAGEILLNCIDCDEIPQGMSSEEVNKRPAIHSVIVIEPVCMEWTRSERDITLFLLRIDLHGFKASHLDGIALKTTESSFTVYEEKNG 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10350225 10369698 - ClG42_09g0109000.10 Clacu09g1090 257398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1090 1051 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 523 731 - -
Clacu09g1090 1051 Pfam Histidine biosynthesis protein 743 989 IPR006062 GO:0000105(InterPro)
Clacu09g1090 1051 Pfam Protein kinase domain 6 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1090 1051 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Clacu09g1090 1051 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1090 1051 SUPERFAMILY Class I glutamine amidotransferase-like 523 723 IPR029062 -
Clacu09g1090 1051 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Clacu09g1090 1051 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 523 724 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Clacu09g1090 1051 FunFam Imidazole glycerol phosphate synthase hisHF 519 744 - -
Clacu09g1090 1051 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
Clacu09g1090 1051 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 740 992 IPR050064 GO:0000107(PANTHER)
Clacu09g1090 1051 SMART serkin_6 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1090 1051 CDD GATase1_IGP_Synthase 524 722 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Clacu09g1090 1051 SUPERFAMILY Ribulose-phoshate binding barrel 739 984 IPR011060 -
Clacu09g1090 1051 Gene3D - 521 743 IPR029062 -
Clacu09g1090 1051 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Clacu09g1090 1051 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1090 1051 NCBIfam imidazole glycerol phosphate synthase subunit HisH 524 722 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Clacu09g1090 1051 CDD STKc_MAPKKK 2 258 - -
Clacu09g1090 1051 Gene3D Aldolase class I 744 1001 IPR013785 -
Clacu09g1090 1051 Pfam Glutamine amidotransferase class-I 526 721 IPR017926 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1758 Clacu-Chr1:29753652 Clacu09g1090 Clacu-Chr9:10350225 2.20E-62 dispersed
Clacu01g2254 Clacu-Chr1:33679821 Clacu09g1090 Clacu-Chr9:10350225 1.00E-80 dispersed
Clacu02g0922 Clacu-Chr2:11740766 Clacu09g1090 Clacu-Chr9:10350225 2.90E-82 dispersed
Clacu03g0063 Clacu-Chr3:782369 Clacu09g1090 Clacu-Chr9:10350225 2.50E-53 dispersed
Clacu09g1090 Clacu-Chr9:10350225 Clacu10g0440 Clacu-Chr10:5489405 1.80E-11 dispersed
Clacu09g1090 Clacu-Chr9:10350225 Clacu02g0208 Clacu-Chr2:1997652 1.80E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73828 PF00977 His_biosynth 1.20E-26 CL0036 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1090 K01663 - csv:101205184 969.148