Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1107 ATGATTACACGTGGACATGGGACCCACGGTTTACCTTGTGGAGTTAGGGATTTTCAGTCCAATTTGCTCAGAGCCAAATTCCGTCGTTCTGATTTCCGATTCCGATTGATCGACGAACGTTGGTCGCCGGCGGTGGGGGATTTGTATCGTCTTCCATTTGAATTCAATCAATCCCCATACAATTCCACAGCCGCCCGCTTTTCCGAACGGGGCAATTTTCGGGGTGTTTGTTGGTTTGTTCCATGGTCAATGGCGTATACATTGGAATCGTGGACGAAGGAATACAATGAAGCTTTGAAACTGTCTGAAGATATCAATGGCATGATTTCTGAGAGAAGTTCACTTGCTGCATCTGGACCGGAAGCTCAGCGTCATGGCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGCCGCAGGGACATGATTGCAAATTTGAGATCAAAAGCTAAGCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCTAACCGGGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTCATGAACAGAACAGAAGGCTTGGACAACCGAGGCCTAGTTGGTTTTCAACGACAAATTATGAGAGAGCAAGATGAAGGCCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTAGCCGTCAATGAAGAACTTAACCTTCACACGAGACTTATTGATGATTTGGATGAACATGTCGATGTTACAGATTCCCGATTACGGCGAGTGCAGAAGAGGCTGGCAATACTGAACAAGCGGACCAAGGGTGGTTGCACTTGCATGTCAATGATTTTATCAGTTGTTGGGATTGTCGTTCTTATCGCTGTCATATGGCTACTGGTCAAGTATTTGTAA 951 44.69 MITRGHGTHGLPCGVRDFQSNLLRAKFRRSDFRFRLIDERWSPAVGDLYRLPFEFNQSPYNSTAARFSERGNFRGVCWFVPWSMAYTLESWTKEYNEALKLSEDINGMISERSSLAASGPEAQRHGSAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKAKQMASTLNMSNFANRDSLLGPEIKPADVMNRTEGLDNRGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELNLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMILSVVGIVVLIAVIWLLVKYL 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10578038 10580582 + ClG42_09g0110700.10 Clacu09g1107 257415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1107 316 PANTHER SYNTAXIN 93 302 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Clacu09g1107 316 Gene3D - 222 284 - -
Clacu09g1107 316 CDD SNARE_Qc 223 280 - -
Clacu09g1107 316 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 220 282 IPR000727 -
Clacu09g1107 316 SMART tSNARE_6 215 282 IPR000727 -
Clacu09g1107 316 FunFam syntaxin-51 isoform X2 222 284 - -
Clacu09g1107 316 Pfam SNARE domain 257 307 IPR000727 -
Clacu09g1107 316 SUPERFAMILY SNARE fusion complex 211 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1107 Clacu-Chr9:10578038 Clacu10g0465 Clacu-Chr10:5680693 3.50E-96 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1107 K08503 - csv:101208669 420.624