Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1115 ATGACAATCGACCACCACTCCGATCAAACCACCGATGATGATTCCCACCATCTCCATCCTACTCTTCCCACGCCAGTTGTCGCCAATGGCACCGACTGCGAGAATGCCGGAGATGACCTCTTCGTCCCTCCCCTGAACTTCGCTGTCGTTGACAACGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCTTTCTTGCAGACGTTAGGCCTTCGTTCGATTATATGTCTTTGTCCCGAGCCATATCCTGAGGCCAACATGGATTTTCTCAAGTCCAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTTCTAAGGCTGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTACTATTTGGAGCCTTTTGTGAACATTCCAGACTACACAATTCGTGAAGTACTTAAAGTTATTCTTGATGTGAGGAATCGCCCAGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGTTGCAGAAATGGTGCCTATCGTCAGTGTTTGATGAGTACCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATTGAACTATTCGACATTTCTGGCTTGAAGCATTTGCCACCATCATTTTCTTGTTCCGAAAGTTAA 702 46.3 MTIDHHSDQTTDDDSHHLHPTLPTPVVANGTDCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEANMDFLKSNGIRLFQFGIEGSKAGSDKVDAYVNLILECMRNLDMSADQMYYLEPFVNIPDYTIREVLKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPPSFSCSES 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10695403 10697802 + ClG42_09g0111500.10 Clacu09g1115 257423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1115 233 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 230 IPR020422 GO:0006470(InterPro)
Clacu09g1115 233 PANTHER TYROSINE-PROTEIN PHOSPHATASE 24 227 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Clacu09g1115 233 Gene3D Protein tyrosine phosphatase superfamily 40 220 IPR029021 -
Clacu09g1115 233 Pfam Tyrosine phosphatase family 42 221 IPR004861 -
Clacu09g1115 233 PRINTS Plant and fungal dual specificity phosphatase signature 41 58 IPR020428 GO:0016791(InterPro)
Clacu09g1115 233 PRINTS Plant and fungal dual specificity phosphatase signature 78 91 IPR020428 GO:0016791(InterPro)
Clacu09g1115 233 PRINTS Plant and fungal dual specificity phosphatase signature 97 111 IPR020428 GO:0016791(InterPro)
Clacu09g1115 233 PRINTS Plant and fungal dual specificity phosphatase signature 144 158 IPR020428 GO:0016791(InterPro)
Clacu09g1115 233 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 41 218 IPR029021 -
Clacu09g1115 233 MobiDBLite consensus disorder prediction 1 23 - -
Clacu09g1115 233 ProSitePatterns Tyrosine specific protein phosphatases active site. 166 176 IPR016130 GO:0016311(InterPro)
Clacu09g1115 233 CDD PFA-DSP_Siw14 40 217 - -
Clacu09g1115 233 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1046 Clacu-Chr3:18753412 Clacu09g1115 Clacu-Chr9:10695403 6.50E-56 dispersed
Clacu02g1854 Clacu-Chr2:32012657 Clacu09g1115 Clacu-Chr9:10695403 2.30E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1115 K18045 - csv:101209768 352.829