Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1161 ATGGGTGGCAGTGAGATGAATAAATCCACGAAGGAGGAATCCAAGACAACACCTGCCACTACACAGGAACAGTCTCCAAACACAAGCACTGGCACCGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGGCAACAAGCCCCCAGGCACACACATATATGTGGGGGGTACAGCCTATTATGCCCCCTTATGGAACCCCTCCACACCCGTATGTTGCAATGTATCCTCATGGTGGCATATATGCTCATCCGCCTATGCCTCCGGGATCATATCCTTACAGTCCTTTTGCCATAGCTTCTCCAAATGGCATTGCTGAGACTTCTGGGAATACTCCAGGCAACATGGAAGGGGAAGGTAAGCCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGACCATCTGCTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACAAGTGAAAGAAGTGGTGCTGACTCTGAAAATGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCGCATCCATTGGTGAACCAAACAATGTCCATGATACCAATTCAAGCTTCTGGAGCTGTTACAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACCCCAACGACTTCTGCCATCCCTTCATTGTGTGGGAAGGTCCCTTCGGCTCCGGTTCCAGGAGCTGTTGCTGCTGGGTCACGGGACAGCATTCTGTCCCAACCTTGGTTACAGGATGAAAGAGAGCTGAAAAGACAAAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGATCTCGGTTGCGCAAACAGGCTGAATGCGATGAGCTGTCTCAGCGTGCGGAAGCTTTGAAGGAAGAAAATGCGAGTCTTAGATCTGAAGTGGATAGGATTAGGAGTGAGTATGAGCAACTTCTTTCAGAAAATGCCTCTCTCAAGAGGAGGCTTGGAGAAAGTGATGGAAATGAAGATCCAAGATCTGCCAAAGCCAAAGACGGCCAAAATTTGAATAAAGGTCACCATACATCCCGGACCCAACTTGCTAAAGGAACTGACCCGTGTCGTCTCGGGACTGTTGATTCTTACGGAGGCTTCATCTTTAACCCGAAGCTCTGTGTAATTTCGGGTGTAATCAGCGACGTTTCCGTCGTGATTCCGTCGGCCGGCGGTCTTCGGTCACCGGAACTGAGACACTGCCATGCACCTATCGATTCTAAGAGTTGCATTTCCGCTGGATTCTTTAGAGGTTGTTCATCATTTTGCATCCCAAAGTCTGGATCTAGTTTGGATAAATTTCGATTGAGGGGCTTAAGAATAAGAGCTTCAGATGATTCTCAGAATGTTTATCCAGTTGCACCTGTTCAATTTGAATCCCCAGTTGGCCAGCTATTGGCCCAGATTTTGCAATCCCACCCTCATTTGCTTCCTGCAACTGTGGATCAGCAACTTGATAACCTTCAAACACAGAGAGATTCGCAGACAGAAGAGACTCCTTCCTCATCTCAAGATCCTCTCTACAAGAGGATAGCTGAAGTGAAAGAGAAAGAAAGGCGAAAGACGTTGGAAGAGATATTATATTGCTTGATCGTTGGAAAGTTTGTGGAGAATGACATTTCAATGATCCCCAAGATAACAGAAACCTCTGATCCTACTGGCCGAGTTGATTTTTGGCCAAACCAAGAGCAGAAACTGGAATCTGTCCACTCTCCTGAGGCATTTGAAATGATTCAAAGTCACTTGTCTCTTGTCCTTGGAGACCGATTTGTCGGTCCCCTTACTTCCATTGTTGAAATGAGCAAAATAAAACTTGGGAAGCTATATGCGGCTTCTATAATGTATGGATACTTTCTCAAAAGAGTTGATCAACGTTTCCAACTCGAAAGGACCATGAAAACTCTTCCTGAAGCGTTTACAAAAGACTTTGATGAACCGATACCAGCAAATCAACTCTGGGATCCCGATTCCTTGATCATGATTCCACCTGATGATGAAGGGGTCGGCGACAGCCGGGGATTTATCAACGCTGATGAAAGCAAATCATATAGATTGCGATCCTATGTGATGTATTTGGATTCCGAGACACTTCAAAGATATGCAACATTGAGATCCAAAGAAGCTATATCTTTGATCGAAAAGCAGACTCAAGCATTGTTTGGAAAACCAGACATTAGGATAGCTGATGATGGTTCAATCGACACATTCAACGATGAAGTGATTTCTATTACATTCTCTGGGCTGACAAAGCTAGTACTGGAGGCTGTTGCGTTCGGATCATTCCTATGGGATGCAGAAAGCTATGTCGAATCAAAATACAACTTCATCAAAAGCTGA 2487 44.55 MGGSEMNKSTKEESKTTPATTQEQSPNTSTGTVNPEWSGFQAYSPIPPPGYLATSPQAHTYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAETSGNTPGNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGPSANGVYSKSAESESEGTSERSGADSENDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSMIPIQASGAVTGPATNLNIGMDYWGTPTTSAIPSLCGKVPSAPVPGAVAAGSRDSILSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGNEDPRSAKAKDGQNLNKGHHTSRTQLAKGTDPCRLGTVDSYGGFIFNPKLCVISGVISDVSVVIPSAGGLRSPELRHCHAPIDSKSCISAGFFRGCSSFCIPKSGSSLDKFRLRGLRIRASDDSQNVYPVAPVQFESPVGQLLAQILQSHPHLLPATVDQQLDNLQTQRDSQTEETPSSSQDPLYKRIAEVKEKERRKTLEEILYCLIVGKFVENDISMIPKITETSDPTGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGDRFVGPLTSIVEMSKIKLGKLYAASIMYGYFLKRVDQRFQLERTMKTLPEAFTKDFDEPIPANQLWDPDSLIMIPPDDEGVGDSRGFINADESKSYRLRSYVMYLDSETLQRYATLRSKEAISLIEKQTQALFGKPDIRIADDGSIDTFNDEVISITFSGLTKLVLEAVAFGSFLWDAESYVESKYNFIKS 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11144387 11166771 + ClG42_09g0116100.10 Clacu09g1161 257469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1161 828 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g1161 828 Pfam Disordered region downstream of MFMR 134 267 - -
Clacu09g1161 828 MobiDBLite consensus disorder prediction 113 223 - -
Clacu09g1161 828 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g1161 828 MobiDBLite consensus disorder prediction 1 39 - -
Clacu09g1161 828 MobiDBLite consensus disorder prediction 145 176 - -
Clacu09g1161 828 MobiDBLite consensus disorder prediction 1 46 - -
Clacu09g1161 828 MobiDBLite consensus disorder prediction 365 390 - -
Clacu09g1161 828 MobiDBLite consensus disorder prediction 294 327 - -
Clacu09g1161 828 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Clacu09g1161 828 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g1161 828 MobiDBLite consensus disorder prediction 362 402 - -
Clacu09g1161 828 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g1161 828 Pfam Protein of unknown function (DUF760) 557 682 IPR008479 -
Clacu09g1161 828 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g1161 828 Gene3D - 302 357 - -
Clacu09g1161 828 PANTHER EXPRESSED PROTEIN 453 827 IPR038925 -
Clacu09g1161 828 SMART brlzneu 299 363 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g1161 828 Coils Coil 312 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1096 Clacu-Chr4:25203038 Clacu09g1161 Clacu-Chr9:11144387 3.30E-92 transposed
Clacu04g1344 Clacu-Chr4:27361863 Clacu09g1161 Clacu-Chr9:11144387 4.80E-91 transposed
Clacu05g0125 Clacu-Chr5:1267517 Clacu09g1161 Clacu-Chr9:11144387 3.50E-27 transposed
Clacu09g0856 Clacu-Chr9:7983953 Clacu09g1161 Clacu-Chr9:11144387 2.30E-41 transposed
Clacu10g0129 Clacu-Chr10:1536087 Clacu09g1161 Clacu-Chr9:11144387 8.30E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48342 PF16596 MFMR_assoc 1.90E-44 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1161 - - - 0.0