Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1167 ATGGAGCTATTTCCAGCACAACCAGATTTATCACTCCAAATTAGCCCTCCAAATACCAATAAACCCTCTTCATCTTGGAGAAGAACAAGTAGTTCTTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTTAGTTTGGAGTCTTCTTCTAAATCCACTCCCAAACATCATCATCCGCATCATCATCATCTTCATCATCTTCATCCTCACTCTTGTTTTGATCTCTCTCTCTCAAATTTAACCCAAATTAACCATCATCAATACCCAAACATATCTCCTCCTCCTAGTACTCCTAATCATCTTCTTCTTCATCATCATCATCATCATCATCGTTATCCCGCTCTCGATACCACCGCACACCTTTTCGAAACCCTAAACAAAACCCACCACCGACCCGCCATTTTCCACCAGACGCCATCACTTGACCCGCCACCACCTCCCTCGCTCCCGTTTCCGGGCCAAACCAATGGGCAAGACTTGGGATTTTTGCGACCCATTAGAGGAATTCCAGTGTACCATCAGACGAATAACCCCTCCGGCACCGGAAACGGCGGTGTTGTCACTCCCTCCGCTGCTGGTCACGGCCAGATTATGATGCGATCGAGATTCTTGTCGAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCTCGGATGAGATGGACTTCCACTCTTCATGCTCGCTTTGTTCATGCTGTTGAACTTCTTGGTGGCCATGAAAGAGCTACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACTTTAGCTCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGACAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAACCAGCCATGGGAAGACAAAATGACAACTCAATTCAACAAACAACAAGGCAAAACCCTCACCAAGATAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTACCAAATGATTCTTCTAGGGACCTTTCTTCATCCCTCGAGAATGATACGGATCCAAAGTGCTCAAACAATGAGAGACTATCAGAAATAAGCTCATCAACAGATCTTTGTGGTGTGACAAATAATCCTCATCAAAAGCCTAATTTAGAATTCACATTAGGAAGGCCAATTTGA 1215 43.87 MELFPAQPDLSLQISPPNTNKPSSSWRRTSSSSQEEVDLGFWNNLSLESSSKSTPKHHHPHHHHLHHLHPHSCFDLSLSNLTQINHHQYPNISPPPSTPNHLLLHHHHHHHRYPALDTTAHLFETLNKTHHRPAIFHQTPSLDPPPPPSLPFPGQTNGQDLGFLRPIRGIPVYHQTNNPSGTGNGGVVTPSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNDNSIQQTTRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDTDPKCSNNERLSEISSSTDLCGVTNNPHQKPNLEFTLGRPI 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11281499 11286165 - ClG42_09g0116700.10 Clacu09g1167 257475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1167 404 Gene3D - 216 273 - -
Clacu09g1167 404 MobiDBLite consensus disorder prediction 11 32 - -
Clacu09g1167 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677(InterPro)
Clacu09g1167 404 MobiDBLite consensus disorder prediction 49 68 - -
Clacu09g1167 404 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 403 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Clacu09g1167 404 MobiDBLite consensus disorder prediction 1 32 - -
Clacu09g1167 404 MobiDBLite consensus disorder prediction 347 373 - -
Clacu09g1167 404 Pfam Myb-like DNA-binding domain 218 269 IPR001005 -
Clacu09g1167 404 SUPERFAMILY Homeodomain-like 214 270 IPR009057 -
Clacu09g1167 404 FunFam Myb family transcription factor 215 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2133 Clacu-Chr5:30060234 Clacu09g1167 Clacu-Chr9:11281499 3.60E-30 dispersed
Clacu08g1709 Clacu-Chr8:26638243 Clacu09g1167 Clacu-Chr9:11281499 1.70E-32 dispersed
Clacu09g1167 Clacu-Chr9:11281499 Clacu11g0212 Clacu-Chr11:1830568 3.10E-17 dispersed
Clacu01g0872 Clacu-Chr1:9986910 Clacu09g1167 Clacu-Chr9:11281499 3.10E-33 transposed
Clacu04g0739 Clacu-Chr4:21617510 Clacu09g1167 Clacu-Chr9:11281499 3.00E-20 transposed
Clacu05g1216 Clacu-Chr5:11300020 Clacu09g1167 Clacu-Chr9:11281499 5.70E-44 transposed
Clacu10g0135 Clacu-Chr10:1630157 Clacu09g1167 Clacu-Chr9:11281499 1.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48344 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1167 - - - 0.0