Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1169 ATGTATGGGGATTGCCAAGTGATGACAAGCAATATGGGAGGAAATATGGTTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAATTTCATGTCCAATTTTCAACATTTTCCTTCCGTTGTTCCTAAGGAAGAAAATGGGTTGATGATGAGAGGAAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCAAGGAATCGAAATGGAAAGTAATAATAATAATGATATTATTCAGCAAAATCAAAAGAAAAAACGCTATCATAGACATACCGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTTAAACCTCGCCAAGTCAAATTTTGGTTCCAAAATCGAAGAACCCAAATGAAGGCACAACAAGATAGATCTGATAATGTGATACTTAGGGCAGAAAATGAGAGCTTAAAGAATGAGAATTATAGATTGCAAACTGCCCTAAGAAACATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTAGGGGAACCAAGCTTGGATGAACAACAGCTTCGCCTTGAAAATGCAAGACTAAGAGATCAGTTGGAACAAGTTTGCTCCTTGACCACAAGATACACTGGGCGCCCAATCCAAGGGATGCCCTCCACAGCTCCTCTTATGCAACCATCTTTGGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATTGTTTCGTCATCTGAAATGATGTCATTGCCCTCGATGCTCCCACCCGAGACCGCCCACTTTCCAGAGGGTGGCCTATTAATTGAGGAGGAAAAAACACTTGCAATGGAGCTTGCTGTTTCATCCATAGCTGAGCTTGTGAAGATGTGTCGCTCGACCGAGCCTCTTTGGGTTCGAGACAGCGAGAGCGGTAAGGAAATTCTAAATGTAGAAGAGCATGGGAGAATGTTTCCATGGCCACTGAACCTCAAACAACACTTGATCAATGAGTTTAGGACAGAAGCCACTCGCGATACCGCCGTTGTTATAATGAATAGCATCACTCTCGTCGATGCCTTTCTCGATGCCAACAAATGGATGGAATTATTTCCTTCCATTGTGGCCAAAGCAAAGACTGTGCAAGTCATTTCATCAAGTGTTTCAGGCCATGCCACTTCTTCCCTTCAGCTGATGTATGCAGAACTTCAGACTCTTTCTCCTCTAGTTCCGACGAGAGAAGCGCATTTTCTCCGGTGCTGCCAACAGAACGCCGACGAAGGAAGCTGGACCGTCGTTGATTTTCCAATCGACAGCTTCCATGACAGTCTGCAGCATTCGTTTCCCAGATATAGGAGAAAGCCCTCTGGCTGCATTATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATAATTTTGTGCATAGTGGAATGGCTTTTGGGGCACATCGTTGGTTGGCTATCTTACAAAGACAGTGTGAGAGAATTGCAAGTCTTATGGCTAGAAATATTTCTGACCTTGGAGTAATACCTTCACCAGAAGCAAGACAGAACCTAATGAAACTCGCACAAAGAATGATTAGAACTTTCTCAGTCAACATAAGCACATCAGGTGGGCAGTCGTGGACGGCGTTATCAGATTCTCCTGACGATACCGTTCGTATAACCACTCGAAAAGTCGTCGAGCCTGGCCAACCCAATGGGGTCATTCTTAGCGCTGTCTCGACCACTTGGCTTCCTTATCCTCACTATCGAGTCTTCGATCTTCTACGAGACGAACGACGTCGGTCTCAGCTGGAGGTTCTTTCCAATGGGAATTCCTTGCATGAGGTTGCTCACATTGCTAATGGCTCCCACCCTGGCAATTGCATCTCTCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGTTGCACTGACCAGTCCGGCAGTCTCGTCATCTACGCGACGATTGACGTCGATTCGATCCAGTTAGCAATGAGTGGAGAAGACCCCTCTTGCATTCCTCTCCTCCCCATAGGGTTTTCCATTGTCCCTGCCATCGGGTCAACCGTCGGCGGACACCCAGCACCGCCACCCGAGGACGGTACCACGAATGCCAACTCCAGCTGCCTCCTTACCGTTGGTTTGCAAGTTCTAGCCAGCACCATCCCGTCGGCGAAGCTCAACTTATCAAGTGTTACTGCCATCAACAACCACCTCTGTAATACGGTGCACCAGATCAACATCGCTCTCGGCAGCCCAGGTCGTCTTGAGAACGGCAATAACGTGGCCGAGCCGAATAATGCACCAACGCCGCCGCCACCGCCGCCCAAGCAATAA 2421 46.76 MYGDCQVMTSNMGGNMVSSESLFSSPIQNPNFNFMSNFQHFPSVVPKEENGLMMRGKEDMESGSGSEQLVEENQGIEMESNNNNDIIQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSLTTRYTGRPIQGMPSTAPLMQPSLDLDMNIYSRQYTEAIVSSSEMMSLPSMLPPETAHFPEGGLLIEEEKTLAMELAVSSIAELVKMCRSTEPLWVRDSESGKEILNVEEHGRMFPWPLNLKQHLINEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVAKAKTVQVISSSVSGHATSSLQLMYAELQTLSPLVPTREAHFLRCCQQNADEGSWTVVDFPIDSFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSDSPDDTVRITTRKVVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVIYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPAIGSTVGGHPAPPPEDGTTNANSSCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINIALGSPGRLENGNNVAEPNNAPTPPPPPPKQ 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11397695 11405547 - ClG42_09g0116900.10 Clacu09g1169 257477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1169 806 ProSiteProfiles START domain profile. 283 522 IPR002913 GO:0008289(InterPro)
Clacu09g1169 806 Gene3D - 329 517 IPR023393 -
Clacu09g1169 806 SUPERFAMILY Bet v1-like 556 774 - -
Clacu09g1169 806 Pfam Homeodomain 93 148 IPR001356 GO:0003677(InterPro)
Clacu09g1169 806 CDD START_ArGLABRA2_like 287 518 - -
Clacu09g1169 806 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 83 778 IPR042160 -
Clacu09g1169 806 SMART START_1 292 519 IPR002913 GO:0008289(InterPro)
Clacu09g1169 806 SUPERFAMILY Homeodomain-like 81 151 IPR009057 -
Clacu09g1169 806 SMART HOX_1 91 154 IPR001356 GO:0003677(InterPro)
Clacu09g1169 806 Pfam START domain 293 519 IPR002913 GO:0008289(InterPro)
Clacu09g1169 806 MobiDBLite consensus disorder prediction 785 806 - -
Clacu09g1169 806 CDD homeodomain 93 151 IPR001356 GO:0003677(InterPro)
Clacu09g1169 806 SUPERFAMILY Bet v1-like 285 521 - -
Clacu09g1169 806 Coils Coil 149 169 - -
Clacu09g1169 806 FunFam Homeobox-leucine zipper protein HDG1 79 166 - -
Clacu09g1169 806 Gene3D - 78 161 - -
Clacu09g1169 806 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu09g1169 806 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0208 Clacu-Chr5:1846227 Clacu09g1169 Clacu-Chr9:11397695 2.30E-146 dispersed
Clacu05g0936 Clacu-Chr5:8281525 Clacu09g1169 Clacu-Chr9:11397695 3.50E-150 dispersed
Clacu05g1230 Clacu-Chr5:11654153 Clacu09g1169 Clacu-Chr9:11397695 5.20E-144 dispersed
Clacu07g1314 Clacu-Chr7:27934672 Clacu09g1169 Clacu-Chr9:11397695 1.20E-121 dispersed
Clacu09g0194 Clacu-Chr9:1859602 Clacu09g1169 Clacu-Chr9:11397695 6.80E-111 dispersed
Clacu09g1169 Clacu-Chr9:11397695 Clacu10g0244 Clacu-Chr10:2951263 5.30E-08 dispersed
Clacu09g1169 Clacu-Chr9:11397695 Clacu06g0005 Clacu-Chr6:307312 1.30E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48346 PF01852 START 6.40E-43 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1169 - - - 0.0