Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu09g1185 | ATGAGTCTTGATGCTCTTTCTTCCAATGACTTGTTCAACTTCATCATCTACGACACGATCTCCGCAACACCGAACACCGAACACGCCCTCCGCGACTCATCGGAGAATACATTTCTCTCCGTCGACAAGTGTTCGAAACCCTACTCAAGAAAACGCCGTCCGAGTGAGGGAGACAGCAACCGAGCGACACCGTCATCAACAACGACGACGCAACAAGGGAAGAAGAAAAGGAAGAGAAAAGCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGTAAACAAATGAATGAACATCTTTCGGTCTTACGTTCCCTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGTGGTGCAGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTAGAAGCCAAGAAGCTACAAATCTTACAACAAGAAGTAGATCATCATCAAGAACAAGAGATTAATGAAGATTCAAGAATGAGAATGAATGATAATAATAGTAATAAGTTGTTTTCATTTGCAAGTTTGTTGATGCATAATTCAGATCAAAATAACTATTGCTCCCAATACTCAACCAAATACACATCAAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCAAACCTTAGAATCCTCTCAACAAGAAGCCATAGACAACTCTTGAAGCTCATTGCTGGCTTGCAAGCTCTTCGTCTCACTATTCTTCATCTCAATCTCACTGATTTCCACCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAGCTGTTTTGTGTTAA | 924 | 41.45 | MSLDALSSNDLFNFIIYDTISATPNTEHALRDSSENTFLSVDKCSKPYSRKRRPSEGDSNRATPSSTTTTQQGKKKRKRKAKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQILQQEVDHHQEQEINEDSRMRMNDNNSNKLFSFASLLMHNSDQNNYCSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC | 307 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 11613214 | 11615832 | - | ClG42_09g0118500.10 | Clacu09g1185 | 257493 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu09g1185 | 307 | Gene3D | - | 82 | 174 | IPR036638 | GO:0046983(InterPro) | |
| Clacu09g1185 | 307 | Pfam | Helix-loop-helix DNA-binding domain | 93 | 144 | IPR011598 | GO:0046983(InterPro) | |
| Clacu09g1185 | 307 | SMART | finulus | 98 | 149 | IPR011598 | GO:0046983(InterPro) | |
| Clacu09g1185 | 307 | MobiDBLite | consensus disorder prediction | 41 | 91 | - | - | |
| Clacu09g1185 | 307 | PANTHER | MAX DIMERIZATION, MAD | 54 | 299 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Clacu09g1185 | 307 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 92 | 143 | IPR011598 | GO:0046983(InterPro) | |
| Clacu09g1185 | 307 | Coils | Coil | 140 | 160 | - | - | |
| Clacu09g1185 | 307 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 91 | 160 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g1717 | Clacu-Chr3:30958033 | Clacu09g1185 | Clacu-Chr9:11613214 | 1.80E-39 | dispersed | |
| Clacu05g1029 | Clacu-Chr5:9107520 | Clacu09g1185 | Clacu-Chr9:11613214 | 1.10E-21 | dispersed | |
| Clacu09g1185 | Clacu-Chr9:11613214 | Clacu08g1291 | Clacu-Chr8:22829926 | 3.80E-47 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 48348 | PF00010 | HLH | 1.00E-10 | No_clan | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu09g1185 | - | - | - | 0.0 |