Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1206 ATGACCGACTATCGATTACCACCGACCATGAATCTCTGGGCGGATGAGAACGTCTCCATGATGGACGTTTTCACCAACTCCGATCTCAGTTCTTTCTGGGTTACGCCGCCACAGCCACAGCAACTTCCTCAGCCACCTTATTTCACCTCAACAGACCCGAGTAAAGCCGTCGGTCAAGCAACACCGCCACCGTCCATGGCGGTTTTTAACCAGGAGACTCTTATGCAGCGTCTCCAAACGTTGATTGAAGGTGCTCATGAGAACTGGACTTACGCTATCTTCTGGCAGTCTTCGTACGACTACTCCGGCCGTACGGTCTTGGGGTGGGGGGATGGATATTACAAAGGCGAGGAAGATAAAGGGAAAGAGAAAGCTAAATCGAGTACCTCAAAAGCAGAGCAAGAACACCGGAAGAAGGTACTTCGTGAGCTTAACTCTCTCATTTCTGGTTCTCCTTCCTCTGAAGGCGACGCCGTCGATGAGGTTGTCACCGACACCGAGTGGTTCTACTTGGTGTCGATGACTCAGTCGTTTGCTTCCGGTGTTGGATTGCCGGGACAGGCGTTTTTCGATTCGACCCCTATTTGGGTTGCTGGTTCGGATCGGCTTGCGAGCTCGGTCTGTGAGCGGGCTCGTCAGGGTCAGGTTTTCGGGTTGCAGACTATGGTTTGTATACCGTCGGCGAACGGAGTTGTTGAATTGGGATCGAGTGAGTTGATTTTCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTTAATTTCAACAATTTGGAGGTGGAGAATTGGCCAATTAGTGGGGTTGACCAAGGGGAGAATGATCCTTCTTCACTTTGGATTAGTGAGCCATCTTCAAACGCCATTGAAATTACTAATCCTGTTGCTTCAGCTTCAGCTCCAGCTCCAACTCCAAGCACAACAAACAGCCAACCGATTTCTAAAATTACAACAGAGACGATCGAGAACCCAAAATCTAGTGTTGTAATTGAAACTCCAAGCCCTGTTGTTCCTCCTCCTTCTCAAAAAACTCACCGACAGTCACAGCCGATTCAGACACAGAGCTTCTTCACCAACAGGGAATTGAATTTCTCTGAATTTGGGTATGAGAATGGTCGTTTGAAGGATGGGAATTCCACTTCGTTGAAGCCGGAATCCGGTGAGATTTTGAATTTTGGGGAGAGTAAGAGGAGTTCTTATCCCAACACAGATAACAACTTGCCTTCAGGCAATTCTTTGTTTGGTGGGGATGAGAACAAGAAGAAGAGATCCCCCACTTCACGTGGGAGTAATGAAGAAGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCTTCTTCTGGGGCTGTGAAATCAGGTCTTTGCGCTGGCGATTCCGATCACTCCGATCTTGAAGCTTCGGTAATTCGTGAGGTGGAGAGTAGTAGAGTGGTGGAGCCGGAGAAACGGCCTCGGAAAAGAGGGCGAAAGCCAGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAAGCAGAGAGGCAAAGGAGAGAAAAGCTTAACCAAAGATTCTATGCTCTTCGAGCTGTTGTTCCAAATGTATCCAAAATGGACAAAGCTTCACTCCTTGGTGATGCTATCTCTTACATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAAGATTTGCAGAAGCAATTGGATTCAGTGAAGAAGTTGATAATGTCTTCTAATAAAGATTCGTGCATATCAAGCTCAAATCAACCCCCACCAGATCAATCATCAAACACAAACCACAGTGATATCGAAACCGATATTGACGTGAAGATAATCAGTTGGGATGCGATGATCCGAATCCAATCTAGTAAGAAAAACCATCCTGCTGCACGGCTGATGGCGGCTTTGGAAGAACTCGACTTGGATATCAACCACGCGAGCATCTCAGTTGTCAATGATCTCATGATCCAACAAGCAACTGTGAAGATGGGGAGTCGATTATACACTCAAGAGCAGCTAAGGATAGCATTATCGTCGAAAATAGGCGCAACTCGGTAG 2043 46.89 MTDYRLPPTMNLWADENVSMMDVFTNSDLSSFWVTPPQPQQLPQPPYFTSTDPSKAVGQATPPPSMAVFNQETLMQRLQTLIEGAHENWTYAIFWQSSYDYSGRTVLGWGDGYYKGEEDKGKEKAKSSTSKAEQEHRKKVLRELNSLISGSPSSEGDAVDEVVTDTEWFYLVSMTQSFASGVGLPGQAFFDSTPIWVAGSDRLASSVCERARQGQVFGLQTMVCIPSANGVVELGSSELIFQSSDLMNKVRVLFNFNNLEVENWPISGVDQGENDPSSLWISEPSSNAIEITNPVASASAPAPTPSTTNSQPISKITTETIENPKSSVVIETPSPVVPPPSQKTHRQSQPIQTQSFFTNRELNFSEFGYENGRLKDGNSTSLKPESGEILNFGESKRSSYPNTDNNLPSGNSLFGGDENKKKRSPTSRGSNEEGMLSFTSGVILPSSGAVKSGLCAGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLIMSSNKDSCISSSNQPPPDQSSNTNHSDIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSSKIGATR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12075439 12077481 + ClG42_09g0120600.10 Clacu09g1206 257514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1206 680 FunFam Transcription factor bHLH13 489 563 - -
Clacu09g1206 680 MobiDBLite consensus disorder prediction 473 506 - -
Clacu09g1206 680 SMART finulus 502 551 IPR011598 GO:0046983(InterPro)
Clacu09g1206 680 MobiDBLite consensus disorder prediction 341 357 - -
Clacu09g1206 680 MobiDBLite consensus disorder prediction 574 597 - -
Clacu09g1206 680 Coils Coil 542 576 - -
Clacu09g1206 680 MobiDBLite consensus disorder prediction 392 413 - -
Clacu09g1206 680 MobiDBLite consensus disorder prediction 118 137 - -
Clacu09g1206 680 Pfam Plant bHLH transcription factor, ACT-like domain 602 658 IPR054502 -
Clacu09g1206 680 Gene3D - 495 573 IPR036638 GO:0046983(InterPro)
Clacu09g1206 680 MobiDBLite consensus disorder prediction 296 330 - -
Clacu09g1206 680 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 74 254 IPR025610 -
Clacu09g1206 680 MobiDBLite consensus disorder prediction 296 357 - -
Clacu09g1206 680 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 496 545 IPR011598 GO:0046983(InterPro)
Clacu09g1206 680 MobiDBLite consensus disorder prediction 392 434 - -
Clacu09g1206 680 CDD bHLH_AtAIB_like 493 568 - -
Clacu09g1206 680 PANTHER MYC 66 675 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Clacu09g1206 680 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 499 569 IPR036638 GO:0046983(InterPro)
Clacu09g1206 680 Pfam Helix-loop-helix DNA-binding domain 500 546 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1206 Clacu-Chr9:12075439 Clacu10g0081 Clacu-Chr10:1089995 3.20E-30 dispersed
Clacu06g0369 Clacu-Chr6:4416039 Clacu09g1206 Clacu-Chr9:12075439 3.40E-20 transposed
Clacu06g0849 Clacu-Chr6:10589599 Clacu09g1206 Clacu-Chr9:12075439 7.50E-08 transposed
Clacu10g0161 Clacu-Chr10:1951009 Clacu09g1206 Clacu-Chr9:12075439 4.00E-211 wgd
Clacu07g0071 Clacu-Chr7:1130871 Clacu09g1206 Clacu-Chr9:12075439 4.90E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48352 PF14215 bHLH-MYC_N 7.20E-55 CL0161 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1206 K13422 - csv:101218165 1155.97