Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1220 ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGGCCTAATTTCAACCTTCACCACCATCATCAGAACCACCACCATCCCGACTCTCAATCTGGTCATGATGATGAATCCCATCCTCCGTCAGAATTTGTCACCGCCGCAGACTCTACCGCACCTGCCACAGATATGGTGGCCTCTCGCCGACCACGCGGCCGTCCACCCGGTTCCAAAAACAAACCGAAGCCACCGGTCATCATAACCCGAGAAAGCGCCAATACCCTAAGGGCTCATATTCTTGAGGTTGGTAATGGCTGTGACGTCTTCGATAGCATCGCTACCTATGCTCGTCGTCGCCAGCGAGGGATCTGCATCTTGAGCGGTAGTGGAATGGTAATGAATGTCAACTTACGGCAACCGACGGCGACGGGGTCTGTGTTAACCCTACATGGAAGGTTTGAGATATTATCCCTTACTGGATCTTTCTTGCCGCCGCCTGCTCCTCCCGGCGCTACTAGTTTGACTATATACTTAGCCGGTGGGCAAGGGCAAGTGGTCGGTGGAAACGTTGTTGGGGAATTGGTGGCGGCAGGGCCAGTTACAATCATCGCGGCATCATTTACAAATGTAGCGTATGAGAGATTGCCACTAGAAGAACAAGAGCAAGAACAAGAACAAGAGCAAGATCAACTTCAGATGCAGCCACCAACGTCTCAGGGCGGCAGTAGCGGTGGAAACAATAACAACCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAACCAAATTCAGCTACCATTTTGA 816 50.37 MAGLDLGNRYIHQLQRPNFNLHHHHQNHHHPDSQSGHDDESHPPSEFVTAADSTAPATDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDSIATYARRRQRGICILSGSGMVMNVNLRQPTATGSVLTLHGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLEEQEQEQEQEQDQLQMQPPTSQGGSSGGNNNNPFPDPSSGLPFFNLPLNMQNQIQLPF 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12287147 12287962 - ClG42_09g0122000.10 Clacu09g1220 257528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1220 271 CDD DUF296 92 175 IPR005175 -
Clacu09g1220 271 ProSiteProfiles PPC domain profile profile. 88 224 IPR005175 -
Clacu09g1220 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 263 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu09g1220 271 Gene3D - 91 226 - -
Clacu09g1220 271 MobiDBLite consensus disorder prediction 215 258 - -
Clacu09g1220 271 MobiDBLite consensus disorder prediction 22 81 - -
Clacu09g1220 271 PIRSF ESCAROLA 7 269 IPR014476 GO:0003680(InterPro)
Clacu09g1220 271 MobiDBLite consensus disorder prediction 31 45 - -
Clacu09g1220 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 204 IPR005175 -
Clacu09g1220 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 217 - -
Clacu09g1220 271 MobiDBLite consensus disorder prediction 223 258 - -
Clacu09g1220 271 FunFam AT-hook motif nuclear-localized protein 91 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0296 Clacu-Chr5:2562919 Clacu09g1220 Clacu-Chr9:12287147 1.50E-81 dispersed
Clacu06g0033 Clacu-Chr6:547548 Clacu09g1220 Clacu-Chr9:12287147 4.60E-60 dispersed
Clacu07g0338 Clacu-Chr7:3843198 Clacu09g1220 Clacu-Chr9:12287147 7.20E-58 dispersed
Clacu08g1329 Clacu-Chr8:23297496 Clacu09g1220 Clacu-Chr9:12287147 1.70E-44 dispersed
Clacu09g1220 Clacu-Chr9:12287147 Clacu11g0821 Clacu-Chr11:8110685 8.50E-51 dispersed
Clacu10g0174 Clacu-Chr10:2032372 Clacu09g1220 Clacu-Chr9:12287147 1.30E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1220 - - - 0.0