Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g1220 | ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGGCCTAATTTCAACCTTCACCACCATCATCAGAACCACCACCATCCCGACTCTCAATCTGGTCATGATGATGAATCCCATCCTCCGTCAGAATTTGTCACCGCCGCAGACTCTACCGCACCTGCCACAGATATGGTGGCCTCTCGCCGACCACGCGGCCGTCCACCCGGTTCCAAAAACAAACCGAAGCCACCGGTCATCATAACCCGAGAAAGCGCCAATACCCTAAGGGCTCATATTCTTGAGGTTGGTAATGGCTGTGACGTCTTCGATAGCATCGCTACCTATGCTCGTCGTCGCCAGCGAGGGATCTGCATCTTGAGCGGTAGTGGAATGGTAATGAATGTCAACTTACGGCAACCGACGGCGACGGGGTCTGTGTTAACCCTACATGGAAGGTTTGAGATATTATCCCTTACTGGATCTTTCTTGCCGCCGCCTGCTCCTCCCGGCGCTACTAGTTTGACTATATACTTAGCCGGTGGGCAAGGGCAAGTGGTCGGTGGAAACGTTGTTGGGGAATTGGTGGCGGCAGGGCCAGTTACAATCATCGCGGCATCATTTACAAATGTAGCGTATGAGAGATTGCCACTAGAAGAACAAGAGCAAGAACAAGAACAAGAGCAAGATCAACTTCAGATGCAGCCACCAACGTCTCAGGGCGGCAGTAGCGGTGGAAACAATAACAACCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAACCAAATTCAGCTACCATTTTGA | 816 | 50.37 | MAGLDLGNRYIHQLQRPNFNLHHHHQNHHHPDSQSGHDDESHPPSEFVTAADSTAPATDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDSIATYARRRQRGICILSGSGMVMNVNLRQPTATGSVLTLHGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLEEQEQEQEQEQDQLQMQPPTSQGGSSGGNNNNPFPDPSSGLPFFNLPLNMQNQIQLPF | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 12287147 | 12287962 | - | ClG42_09g0122000.10 | Clacu09g1220 | 257528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g1220 | 271 | CDD | DUF296 | 92 | 175 | IPR005175 | - | |
Clacu09g1220 | 271 | ProSiteProfiles | PPC domain profile profile. | 88 | 224 | IPR005175 | - | |
Clacu09g1220 | 271 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 28 | 263 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Clacu09g1220 | 271 | Gene3D | - | 91 | 226 | - | - | |
Clacu09g1220 | 271 | MobiDBLite | consensus disorder prediction | 215 | 258 | - | - | |
Clacu09g1220 | 271 | MobiDBLite | consensus disorder prediction | 22 | 81 | - | - | |
Clacu09g1220 | 271 | PIRSF | ESCAROLA | 7 | 269 | IPR014476 | GO:0003680(InterPro) | |
Clacu09g1220 | 271 | MobiDBLite | consensus disorder prediction | 31 | 45 | - | - | |
Clacu09g1220 | 271 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 92 | 204 | IPR005175 | - | |
Clacu09g1220 | 271 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 88 | 217 | - | - | |
Clacu09g1220 | 271 | MobiDBLite | consensus disorder prediction | 223 | 258 | - | - | |
Clacu09g1220 | 271 | FunFam | AT-hook motif nuclear-localized protein | 91 | 219 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0296 | Clacu-Chr5:2562919 | Clacu09g1220 | Clacu-Chr9:12287147 | 1.50E-81 | dispersed | |
Clacu06g0033 | Clacu-Chr6:547548 | Clacu09g1220 | Clacu-Chr9:12287147 | 4.60E-60 | dispersed | |
Clacu07g0338 | Clacu-Chr7:3843198 | Clacu09g1220 | Clacu-Chr9:12287147 | 7.20E-58 | dispersed | |
Clacu08g1329 | Clacu-Chr8:23297496 | Clacu09g1220 | Clacu-Chr9:12287147 | 1.70E-44 | dispersed | |
Clacu09g1220 | Clacu-Chr9:12287147 | Clacu11g0821 | Clacu-Chr11:8110685 | 8.50E-51 | dispersed | |
Clacu10g0174 | Clacu-Chr10:2032372 | Clacu09g1220 | Clacu-Chr9:12287147 | 1.30E-80 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g1220 | - | - | - | 0.0 |