Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1326 ATGGGAAAGCATGGGCCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGGCCTCCTGATAAACCAGTACTATGTAATGCCTGTGGATCCCGATGGAGGACCAAAGGAACCCTTGCAAACTATACCCCTTTGCATGCTCGGGCCGATCCCGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAATATTTCAATAAATAAAAACAAAGAAGTTAAACTGCTTAAAAGAAAGCTGCAACAAGCCGATGGATCAATTGGGTGGATGATTCCCGACCAAGGTCAGGGTTACCATAGAGTAGTGGATGAAGATACGAGCAATAGATCCAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGTGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGAGGACCTGTGTAAATCGTCCAAAGCAGTCCCCAGTTGAAAAACTAACTAAAGATCTATATACTATCTTACGTGAGCAGAGATCATCCTACTTCTCCGAAGCGTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGTTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATTCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCAACATCTAGGACTGGAAAGATGAAGAATCCATATGTATCAGGAGTACAGCAAGAACAAATTAAAAGGGACAACTCTCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTATGTGATGTAGATATAAAGGACATTATAAACTTTGGAGAGTTTGCGAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCGCAGGTTGATATTGCTGAATTTCCCGAGACCCTCAAGAGCTTGTTTGATAGCCCCTATTTCAAGGAGAATTTAACTTCCTTCCAACAACTGCTTAGCGAGGGCGTTTTTGATGTTTCCTTCCTTGGAACAAAGATCGAAGACTGCAAGACTCTTAAAAGGCTTGTATTGTATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAAGATAAAAATGGTAGCAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCATGAATGTTAAGCAACTGCGAGAGAGCTACAACCAAAATATTTCAGAGGTAAAGACCATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCGTGGAAGAAAGTTCAGATCAAGATCTATTGCTAGATGTACGATCGAATAGTTCATTCCCGCAAGCCGAGCTCCTTCACCCGTCCTCTCATTCTGGTGGTAGGCAGGCTAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 1626 42.8 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRVKNISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSVDASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYTILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQFLVNEVYSPHSTTVLVCSENKGMNFPTSRTGKMKNPYVSGVQQEQIKRDNSHHECLQILGNHNSPLCDVDIKDIINFGEFARQLTNEEQQQLMKYLPQVDIAEFPETLKSLFDSPYFKENLTSFQQLLSEGVFDVSFLGTKIEDCKTLKRLVLYNSSKSKWVERYHQLKKDKNGSKGPFLSHANASVSSNFMNVKQLRESYNQNISEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPSSHSGGRQASTCSSSVHPHLVHH 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14890108 14895907 - ClG42_09g0132600.10 Clacu09g1326 257634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1326 541 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g1326 541 MobiDBLite consensus disorder prediction 513 535 - -
Clacu09g1326 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 372 IPR044589 -
Clacu09g1326 541 MobiDBLite consensus disorder prediction 513 541 - -
Clacu09g1326 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Clacu09g1326 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Clacu09g1326 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g1326 541 Pfam Asx homology domain 286 370 IPR028020 -
Clacu09g1326 541 Gene3D - 294 385 IPR038108 -
Clacu09g1326 541 Gene3D - 4 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Clacu09g1326 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g1326 541 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1326 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0225 Clacu-Chr10:2709211 Clacu09g1326 Clacu-Chr9:14890108 5.20E-201 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1369 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.5e-69 257.7
Clacu11g1695 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 7.9e-67 251.1
Clacu01g2068 . 107 283 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.3e-42 167.5
Clacu10g0225 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.7 4.1e-139 491.9
Clacu09g1326 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 1.1e-134 477.2
Clacu10g0225 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.9 1.8e-120 429.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48359 PF13919 ASXH 2.00E-09 No_clan Clacu TF