Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1390 ATGAAGCTCATCCCCTTCCTTCCATGGCTGAACCTCCACATGGCCCTCTTCTTCTTCTTCTTCTTCCTTGCTTCTTCTTCACTTCTTCATTCATCCCCTGCCTCTTCACTTCCCCACAATGAAGGACGAGCGCTTATGTCAATCAAGGCCTCGTTTAGCAATGTAGCTAATGTGTTGCTTGACTGGGATGACGATCACAACCACGATTTCTGTTCATGGCGTGGAGTTTTCTGCGACAATGTTAGCCTTTCTGTTGCTGCTTTGAACTTGTCCAACTTGAATCTGGGTGGGGAGATTTCACCATCCATTGGAGATTTGAGAAACTTACAGTCAATTGACTTTCAAGGGAATAAACTGACTGGCCAAATCCCTGATGAGATCGGTAACTGTGGTCTTCTTGTCCATTTGGACTTGTCTGATAATTTGCTCTATGGAGACATCCCCTTCACGGTTTCAAAGCTAAAGCAGCTCGAGTTTTTAAATATGAAGAACAATCAGTTGACCGGTCCGATTCCTTCAACCTTAACCCAGATTCCCAATCTGAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGGGAGATACCTAGATTAATCTATTGGAATGAAGTTCTGCAATATCTTGGATTACGAGGGAACTTTTTGACAGGGTCGTTGTCTTCCGATATGTGTCAATTGACTGGCTTGTGGTATTTTGATGTAAGGGGAAATAATCTGACTGGAACAATACCGGATAGCATAGGAAACTGTACCAGTTTTGAAATTCTGGATATATCGTACAATCAGATCTCGGGAGAGATTCCATACAACATTGGATTTCTACAAGTGGCCACTTTATCATTACAGGGAAATAGGTTGAGTGGTAAGATTCCTGATGTCATTGGATTGATGCAGGCCCTTGCTGTTCTGGATTTGAGTGAGAATGAGCTTGAAGGACCAATACCGCCAATACTTGGCAACTTGTCCTACACAGGAAAATTGTATCTACATGGAAACAAGTTGACTGGGTCAATTCCTCCTGAGCTGGGCAATATGTCAAAACTTAGCTACTTGCAACTAAATGATAACCAGTTGGTTGGCACAATTCCTTCTGAACTTGGGAAATTGGATCAGTTGTTTGAATTAAATCTTGCCAATAATTATCTTGAAGGACCCATCCCTCATAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCACGGAAACAATCTTAATGGATCAATCCCTTTGGGTTTCCAAAATCTGGAGAGCTTGACCTATTTGAACCTTTCGGCAAACAACTTCAAAGGCAGGATTCCCATGGAGCTGGGGCGCATAGTAAACCTCGATACATTTTGGCTTAAAGTTTTTGTTTCATCCAGGGATCTATCTTGCAATTACTTCTTGGGTCCGGTTCCTGCTTCTATTGGTGATTTGGAACACCTTCTTAGCCTCAATTTGAGCAATAACCGACTCGTCGGGCCGTTGCCGGCAGAATTTGGGAATCTCCGAAGTGTTCAGACTATCATTTTGAACAACAACCATTTTCAAGGGAAAATACCTGATCAGCTGACTAATTGTTTTAGTCTTGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCCATGAAAAATTTCTCTCGATTCGAACCATATAGCTTTATCGGGAATCCGCTGCTGTGTGGAAACTGGCTGGGGTCGATCTGTGGGCCTTATATGGAAAAATCTCGAGCAATGTTGTCTCGGACAGTGGTTGTTTGTATGACATTTGGATTCATAGTATTGTTGTCGATGGTTATAATTGCCGTTTACAAGTCGAATCCCTCGAAGCAATTGATGAAGGGTTCAAGCAAGACCGGGCAAGTTCCTCCAAATCTTGTGGTACTTCATATGGATATGGCTATTCACACCTTTGAGGACATTATGAGAATGACTGAGAATCTAAGCGAGAAGTACATTATTGGTTACGGAGCTTCTAGCACTGTGTACAAATGTTTACTGAAAAATTCCCGACCTATTGCAATTAAGCGACTTTATAATCACTACGCACACAATTTACGGGAGTTTGAGACCGAACTCGAAACCATTGGTAGTATCAGACATAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCACTCTGGGATCTGCTTCATGGGACAGGTAAGAAGGTTAAACTGGATTGGGAAGCACGTCTGAAAATTGCGGTTGGAGCTGCGCAAGGGCTTGCATATCTTCACCATGATTGTAACCCCCGAATCATTCACCGGGATGTCAAGTCTTCAAATATTCTACTGGATGAAAATTTTGAGGCCCATCTTTCTGATTTCGGGATTGCCAAATGCATCCCAACTGCCAAAACACACGCGTCAACTTATGTGCTTGGAACAATTGGCTACATTGATCCGGAGTATGCCCGGACCTCCCGGCTTAACGAGAAGTCTGATGTTTATAGCTTTGGCATTGTTCTTCTTGAACTACTGACCGGGAAGAAAGCTGTGGATGATGAGTCCAATTTGCATCAGCTGATATTGTCCAAGACTGATAACAATACCGTGATGGAAGCTGTTGATCCCGAGGTTTCAGTCACCTGCATTGATTTAGCCCATGTTCGAAAAATGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCCCTCCGAACGGCCAACCATGCATGAAGTTGCACGAGTATTGATCTCCCTCCAGCCACCACCCCCACCTACTGTGAAACAAACTTCATTCCCCACGAAAACGTTGGATTATGCACAGTTTGTGATCGAAAAGGGTCAGAATCGAAACTTGAAAGGGCAGGAGGAGCAGCAGAAGTCAGATGTGAATACTTCGGATGCTCGGTGGTTTGTTCGGTTTGGGGAAGTGATGTCTGAACAACACAGTTTGAACCAATAA 2952 43.09 MKLIPFLPWLNLHMALFFFFFFLASSSLLHSSPASSLPHNEGRALMSIKASFSNVANVLLDWDDDHNHDFCSWRGVFCDNVSLSVAALNLSNLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGLLVHLDLSDNLLYGDIPFTVSKLKQLEFLNMKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLSGKIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGSIPPELGNMSKLSYLQLNDNQLVGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNNLNGSIPLGFQNLESLTYLNLSANNFKGRIPMELGRIVNLDTFWLKVFVSSRDLSCNYFLGPVPASIGDLEHLLSLNLSNNRLVGPLPAEFGNLRSVQTIILNNNHFQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEPYSFIGNPLLCGNWLGSICGPYMEKSRAMLSRTVVVCMTFGFIVLLSMVIIAVYKSNPSKQLMKGSSKTGQVPPNLVVLHMDMAIHTFEDIMRMTENLSEKYIIGYGASSTVYKCLLKNSRPIAIKRLYNHYAHNLREFETELETIGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGTGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQLILSKTDNNTVMEAVDPEVSVTCIDLAHVRKMFQLALLCTKHNPSERPTMHEVARVLISLQPPPPPTVKQTSFPTKTLDYAQFVIEKGQNRNLKGQEEQQKSDVNTSDARWFVRFGEVMSEQHSLNQ 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18391198 18396927 - ClG42_09g0139000.10 Clacu09g1390 257698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1390 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 452 568 - -
Clacu09g1390 983 Gene3D Phosphorylase Kinase; domain 1 611 722 - -
Clacu09g1390 983 Gene3D Ribonuclease Inhibitor 276 570 IPR032675 -
Clacu09g1390 983 SUPERFAMILY L domain-like 39 332 - -
Clacu09g1390 983 CDD STKc_IRAK 653 916 - -
Clacu09g1390 983 Pfam Leucine Rich Repeat 254 274 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 347 369 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 326 345 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 524 541 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 156 176 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 419 439 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 229 250 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 180 199 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 108 130 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 372 393 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 300 321 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 Pfam Leucine Rich Repeat 476 498 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 365 451 - -
Clacu09g1390 983 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
Clacu09g1390 983 Gene3D Ribonuclease Inhibitor 38 201 IPR032675 -
Clacu09g1390 983 Pfam Protein kinase domain 650 910 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1390 983 SMART LRR_typ_2 297 321 IPR003591 -
Clacu09g1390 983 SMART LRR_typ_2 178 202 IPR003591 -
Clacu09g1390 983 SMART LRR_typ_2 417 441 IPR003591 -
Clacu09g1390 983 SMART LRR_typ_2 106 130 IPR003591 -
Clacu09g1390 983 SMART LRR_typ_2 498 522 IPR003591 -
Clacu09g1390 983 SMART LRR_typ_2 474 497 IPR003591 -
Clacu09g1390 983 SMART LRR_typ_2 345 369 IPR003591 -
Clacu09g1390 983 SMART LRR_typ_2 154 177 IPR003591 -
Clacu09g1390 983 SMART LRR_typ_2 226 250 IPR003591 -
Clacu09g1390 983 SUPERFAMILY RNI-like 243 548 - -
Clacu09g1390 983 Gene3D Ribonuclease Inhibitor 202 275 IPR032675 -
Clacu09g1390 983 Gene3D Transferase(Phosphotransferase) domain 1 723 920 - -
Clacu09g1390 983 ProSiteProfiles Leucine-rich repeat profile. 180 202 IPR001611 GO:0005515(InterPro)
Clacu09g1390 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 38 202 - -
Clacu09g1390 983 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 372 914 IPR050647 GO:0009553(PANTHER)|GO:0010103(PANTHER)|GO:0048481(PANTHER)
Clacu09g1390 983 SMART serkin_6 647 914 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1390 983 SUPERFAMILY Protein kinase-like (PK-like) 629 914 IPR011009 -
Clacu09g1390 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 723 923 - -
Clacu09g1390 983 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524(InterPro)
Clacu09g1390 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 618 722 - -
Clacu09g1390 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1390 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 203 274 - -
Clacu09g1390 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 275 364 - -
Clacu09g1390 983 ProSiteProfiles Protein kinase domain profile. 647 916 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1730 Clacu-Chr5:26209422 Clacu09g1390 Clacu-Chr9:18391198 2.10E-18 dispersed
Clacu09g1390 Clacu-Chr9:18391198 Clacu11g1898 Clacu-Chr11:30011244 1.70E-69 dispersed
Clacu09g1390 Clacu-Chr9:18391198 Clacu05g0407 Clacu-Chr5:3500278 1.20E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73831 PF00069 Pkinase 2.90E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1390 K20718 - csv:101213139 1780.38