Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1411 ATGATTGAAGATTACATTTCTGAGTTCAGTTCTATTCCAAAGGAGAGTTTAAATTTTGTATTTCCAATCAAGTTTTTGGGTGAAGTTTGGAAGATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAGGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCTGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGTTCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTGA 1227 45.64 MIEDYISEFSSIPKESLNFVFPIKFLGEVWKMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19447196 19451937 - ClG42_09g0141100.10 Clacu09g1411 257719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1411 408 SUPERFAMILY Actin-like ATPase domain 180 408 IPR043129 -
Clacu09g1411 408 Gene3D Actin; Chain A, domain 4 213 304 - -
Clacu09g1411 408 PANTHER ACTIN 39 400 IPR004000 -
Clacu09g1411 408 Gene3D - 171 371 - -
Clacu09g1411 408 Gene3D - 41 402 - -
Clacu09g1411 408 FunFam Putative actin-related protein 5 372 400 - -
Clacu09g1411 408 Pfam Actin 36 408 IPR004000 -
Clacu09g1411 408 SMART actin_3 38 408 IPR004000 -
Clacu09g1411 408 CDD NBD_sugar-kinase_HSP70_actin 41 214 - -
Clacu09g1411 408 FunFam Major actin 292 371 - -
Clacu09g1411 408 SUPERFAMILY Actin-like ATPase domain 37 186 IPR043129 -
Clacu09g1411 408 ProSitePatterns Actins signature 2. 389 397 IPR004001 -
Clacu09g1411 408 PRINTS Actin signature 82 93 IPR004000 -
Clacu09g1411 408 PRINTS Actin signature 148 161 IPR004000 -
Clacu09g1411 408 PRINTS Actin signature 59 68 IPR004000 -
Clacu09g1411 408 PRINTS Actin signature 269 285 IPR004000 -
Clacu09g1411 408 PRINTS Actin signature 94 116 IPR004000 -
Clacu09g1411 408 PRINTS Actin signature 173 192 IPR004000 -
Clacu09g1411 408 FunFam Actin, alpha skeletal muscle 34 197 - -
Clacu09g1411 408 ProSitePatterns Actins signature 1. 86 96 IPR004001 -
Clacu09g1411 408 ProSitePatterns Actins and actin-related proteins signature. 137 149 IPR020902 -
Clacu09g1411 408 FunFam Actin, muscle 213 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1599 Clacu-Chr6:26825772 Clacu09g1411 Clacu-Chr9:19447196 3.60E-75 dispersed
Clacu09g0404 Clacu-Chr9:3573225 Clacu09g1411 Clacu-Chr9:19447196 6.50E-55 dispersed
Clacu09g1411 Clacu-Chr9:19447196 Clacu10g1739 Clacu-Chr10:30918767 8.40E-212 dispersed
Clacu09g1411 Clacu-Chr9:19447196 Clacu02g0071 Clacu-Chr2:723767 1.30E-212 transposed
Clacu09g1411 Clacu-Chr9:19447196 Clacu01g1629 Clacu-Chr1:28384949 1.30E-212 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1411 K10355 - csv:101214459 755.362