Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g1425 | ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCAGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCCACCGCTCAACACCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG | 801 | 46.57 | MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 19910826 | 19911626 | - | ClG42_09g0142500.10 | Clacu09g1425 | 257733 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g1425 | 266 | MobiDBLite | consensus disorder prediction | 250 | 266 | - | - | |
Clacu09g1425 | 266 | Pfam | Core histone H2A/H2B/H3/H4 | 56 | 166 | IPR007125 | GO:0003677(InterPro) | |
Clacu09g1425 | 266 | MobiDBLite | consensus disorder prediction | 55 | 76 | - | - | |
Clacu09g1425 | 266 | MobiDBLite | consensus disorder prediction | 236 | 266 | - | - | |
Clacu09g1425 | 266 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 83 | 251 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Clacu09g1425 | 266 | SUPERFAMILY | Histone-fold | 59 | 175 | IPR009072 | GO:0046982(InterPro) | |
Clacu09g1425 | 266 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Clacu09g1425 | 266 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Clacu09g1425 | 266 | Gene3D | Histone, subunit A | 64 | 181 | IPR009072 | GO:0046982(InterPro) | |
Clacu09g1425 | 266 | FunFam | Nuclear transcription factor Y subunit gamma | 69 | 181 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g1724 | Clacu-Chr3:31072476 | Clacu09g1425 | Clacu-Chr9:19910826 | 2.20E-62 | dispersed | |
Clacu06g1891 | Clacu-Chr6:29359566 | Clacu09g1425 | Clacu-Chr9:19910826 | 9.60E-53 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48365 | PF00125 | Histone | 6.00E-18 | CL0012 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g1425 | K08066 | - | csv:101213813 | 417.157 |