Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1425 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCAGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCCACCGCTCAACACCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 801 46.57 MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19910826 19911626 - ClG42_09g0142500.10 Clacu09g1425 257733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1425 266 MobiDBLite consensus disorder prediction 250 266 - -
Clacu09g1425 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677(InterPro)
Clacu09g1425 266 MobiDBLite consensus disorder prediction 55 76 - -
Clacu09g1425 266 MobiDBLite consensus disorder prediction 236 266 - -
Clacu09g1425 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 251 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Clacu09g1425 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982(InterPro)
Clacu09g1425 266 MobiDBLite consensus disorder prediction 1 39 - -
Clacu09g1425 266 MobiDBLite consensus disorder prediction 1 76 - -
Clacu09g1425 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982(InterPro)
Clacu09g1425 266 FunFam Nuclear transcription factor Y subunit gamma 69 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1724 Clacu-Chr3:31072476 Clacu09g1425 Clacu-Chr9:19910826 2.20E-62 dispersed
Clacu06g1891 Clacu-Chr6:29359566 Clacu09g1425 Clacu-Chr9:19910826 9.60E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48365 PF00125 Histone 6.00E-18 CL0012 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1425 K08066 - csv:101213813 417.157