Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1433 ATGGACAACATTACTGCCCAATTAAAGAGGGGAATCTCCCGCCAATTCTCCACCGGCTCCTTACGCCGAACCCTAAGTCGTCAGTTCACCCGCCAATCCTCTCTTGACCCTAGGAGGAACAATTTGAGATTCAGCTTTGGCCGACAATCTTCTTTGGACCCTATTCGCCGCTGTCCTGATGATGATAATGAGCTTTCCGTTCCTGAGAATTTGGATTCCACTATGCAGCTTCTCTTTATGGCCTGCCGTGGCGATGTTAGAGGCGTTGAGGATTTGCTTAATGATGGTACTGATGTTAATAGTATTGATTTGGATGGCCGCACTGCTTTGCATATTGCTGCCTGTGAAGGTCATGCTGAGGTTGTTAAGCTTTTGCTTAGCCGTAGGGCTAATATTGACGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCAGATGCTAAATATTACGGAAATACAGAAATTTACAACATTCTGAAGGCACGTGGAGCAAAAGTTCCGAAATTTAGGAAGACACCAATGACTGTTGCAAATCCTAGGGAAGTTCCTGAGTATGAGCTTAATCCATTGGAACTTCAGATTCGAAGGAGTGATGGTATATCAAAGGGGACGTATCAAGTTGCCAAATGGAATGGTACAAAAGTCACTGTGAAAATTCTTGATAAAGATTGTTATTGTAACCCGGATTCTATAAATGCATTCAAACATGAGTTGACATTATTGGAAAAGGTCCGACATCCCAATGTAGTTCAGTTTGTTGGTGCCGTTACCCAGAATTTGCCAATGATGATTGTTTCCGAATACCATCCTAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTTTATCTCCATCTAAAGCCTTAAGATTCGCCCTTGATATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCGGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTTAAAGTCGCTGGATTCGGCTTGATAAGATTGTCAAAAATGTCACCTGACAAAGCAAAACTAGCTCAGCCAGTGGTTATTGATTATTCGAACTCGTACTTAGCACCCGAGATTTACCACGATGAAATATTTGACAGAAGCGTCGATGCATTTTCATTCGGTCTCATTTTATACGAGATGGTTGAGGGTATTCAACCATTTCATCCCAAGCCTCCAGAAGAGGTTGCCAAAGCTATTTGTGCAGAAGGAAAGAGACCTCCATTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGATCCAGAACCTGTAATGAGGCCTACTTTCTCCGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGGTGGTGGAAAGACACATTTAAACTTCCCTGGAAATAA 1422 42.12 MDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDDDNELSVPENLDSTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKLLLSRRANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGTYQVAKWNGTKVTVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSPDKAKLAQPVVIDYSNSYLAPEIYHDEIFDRSVDAFSFGLILYEMVEGIQPFHPKPPEEVAKAICAEGKRPPFKIKSKSYPPDLKELIEECWDPEPVMRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWK 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20259546 20263696 + ClG42_09g0143300.10 Clacu09g1433 257741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1433 473 FunFam Os01g0748600 protein 179 470 - -
Clacu09g1433 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 452 IPR051681 GO:0004674(PANTHER)
Clacu09g1433 473 Gene3D Transferase(Phosphotransferase) domain 1 269 467 - -
Clacu09g1433 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1433 473 SUPERFAMILY Ankyrin repeat 73 176 IPR036770 -
Clacu09g1433 473 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Clacu09g1433 473 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
Clacu09g1433 473 Gene3D Phosphorylase Kinase; domain 1 187 268 - -
Clacu09g1433 473 PIRSF ILK 8 472 - -
Clacu09g1433 473 CDD STKc_MAP3K-like 199 451 - -
Clacu09g1433 473 ProSiteProfiles Protein kinase domain profile. 189 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1433 473 Pfam Protein tyrosine and serine/threonine kinase 199 451 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1433 473 SMART ANK_2a 73 101 IPR002110 GO:0005515(InterPro)
Clacu09g1433 473 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Clacu09g1433 473 SMART ANK_2a 138 167 IPR002110 GO:0005515(InterPro)
Clacu09g1433 473 SMART serkin_6 193 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1433 473 FunFam serine/threonine-protein kinase STY46-like 186 269 - -
Clacu09g1433 473 Gene3D - 48 184 IPR036770 -
Clacu09g1433 473 SUPERFAMILY Protein kinase-like (PK-like) 202 451 IPR011009 -
Clacu09g1433 473 Pfam Ankyrin repeats (3 copies) 78 165 IPR002110 GO:0005515(InterPro)
Clacu09g1433 473 FunFam Integrin-linked protein kinase 1 47 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2485 Clacu-Chr1:35250137 Clacu09g1433 Clacu-Chr9:20259546 1.40E-81 dispersed
Clacu05g2600 Clacu-Chr5:33827712 Clacu09g1433 Clacu-Chr9:20259546 2.40E-58 dispersed
Clacu09g1433 Clacu-Chr9:20259546 Clacu11g1648 Clacu-Chr11:27621285 5.30E-40 dispersed
Clacu09g1433 Clacu-Chr9:20259546 Clacu03g0733 Clacu-Chr3:8172960 3.70E-86 transposed
Clacu09g1433 Clacu-Chr9:20259546 Clacu02g1878 Clacu-Chr2:32268201 3.70E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73832 PF07714 PK_Tyr_Ser-Thr 2.80E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1433 - - - 0.0