Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1557 ATGGCTTCTCATTCCCCTAACCTCGAGTGTCGGATGTACGAAGCAAAGTACCCCGAGGTCGACATGGCCGTCATGATCCAGGTCAAAAACATCGCCGACATGGGCGCTTACGTCTCCCTTCTTGAGTACAACAACATTGAGGGTATGATTCTATTCTCCGAGCTCTCTCGCCGTCGAATTCGTAGTGTCAGCAGCTTAATTAGGGTCGGTCGAATCGAGCCCGTCATGGTCCTCAGGGTCGATAAGGAGAAGGGTTATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGTGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTCGCTGAGACTATGAACATTGATTTGGAGGACTTGTATATCCATGTTGGCTGGCCTTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAGATCATTGTAACTGACCCTGACTCGGTGTTGAATTCTCTCACCCGTGAAGTAAAGGAAGCTGGTCCTGATGGACAGGAGGTAACTAAGATAGTTCCTGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCGTTGAAGGTCCGAGCTGATATTGAGATGAAGTGTTTCCAATTTGATGGCGTTCTTCACATTAAGGAAGCAATGCGTAAAGCTGAAGCTGCTGGAAACGATGATTGTCCTGTTAAAATTAAGTTGGTTGCTCCTCCCCTCTATGTCCTTACTACTCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAAAAAGCAATCATGGCTTGCACCGAGGCAATTGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGACACCCAGAGCGGTGAGTGAAAGAGATGACAAGTTGCTTGCCGAGCACATGGCGAAGCTACGACAAGATAATGAAGAAATCAGCGGAGATGAGGATAGCGAGGAAGAGGAAGACACGGGAATGGGAGAAGTCGATGTTGAGAATGCAGGTTCTGGGATCACTGAGTAA 1035 46.47 MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIRVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLEDLYIHVGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEVTKIVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIMACTEAIEHHKGKLVVKETPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGSGITE 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26203000 26207155 - ClG42_09g0155700.10 Clacu09g1557 257865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1557 344 SUPERFAMILY Nucleic acid-binding proteins 15 97 IPR012340 -
Clacu09g1557 344 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676(InterPro)
Clacu09g1557 344 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676(InterPro)
Clacu09g1557 344 FunFam Eukaryotic translation initiation factor 2 subunit 1 205 327 - -
Clacu09g1557 344 FunFam Eukaryotic translation initiation factor 2 subunit alpha 95 199 - -
Clacu09g1557 344 MobiDBLite consensus disorder prediction 308 344 - -
Clacu09g1557 344 SMART S1_6 19 92 IPR003029 GO:0003676(InterPro)
Clacu09g1557 344 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 319 IPR024055 -
Clacu09g1557 344 MobiDBLite consensus disorder prediction 316 332 - -
Clacu09g1557 344 FunFam Eukaryotic translation initiation factor 2 subunit alpha 7 94 - -
Clacu09g1557 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 6 333 IPR011488 GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(PANTHER)|GO:0033290(PANTHER)|GO:0043022(PANTHER)
Clacu09g1557 344 Coils Coil 306 326 - -
Clacu09g1557 344 Gene3D EIF_2_alpha 205 327 IPR024055 -
Clacu09g1557 344 Gene3D - 6 94 IPR012340 -
Clacu09g1557 344 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723(InterPro)|GO:0003743(InterPro)
Clacu09g1557 344 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 172 IPR024054 -
Clacu09g1557 344 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
Clacu09g1557 344 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0409 Clacu-Chr8:5512895 Clacu09g1557 Clacu-Chr9:26203000 8.60E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1557 K03237 - csv:101209681 633.254