Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1579 ATGAGCCACAGTCCGACATCGTGCGTAGGGACACAGTCACCGATTGTCACCACCTCTGTTTGCTTGATTGTCTGCTCATCGTTTCTGGTCGTCGCAGCTATTCTGTCGTTTTTGGACCAACCTCTTTATCTTCGTCATGCCGCCGGGCGTCGTTTTGGTCGTCGTTTCCATCCACCACCGGAAGCCACCATTTGCTCGCTAGAAAGTTGGTTGGAGAAAGCTACGGCAACTGAGCAATGGATTGCAGAGCTGGAGTCATTGTTTGAATACCTGAATTGTGAGGACCATTTTAAGGTCAGAGGAGTAGTTTTCATGCTTCGAGACGAGGCGCGAATGTGGTGGAGATCCATTGAAGCCTCAGAAGATCATGCCGAAGGACCCATGACTTGGGCAAGGTTTAAGGACCTCCTATACGACTACTATTTTCCCGACAAAGTGAAGGACGACAAGGAAATAAAGTTCCTGCATCTAACCGAGTTGTCTTGTTTTGCACCCGACCTGGTGAGTACGTCAGAGAGGAGGATTAAAAGGTTCATTAGGGGCTTGCGCGAGGAAATTAGAGGTGCGGTCGCCTTAAAGGAGCCAATGACTTTTGCTGCAGCACTTAAGGCGGCACTGATCATGGACAAAAATATGGCCAAGAAACCTCAGGTGACACACTCACGTTGGGAGGTTGGCGCCTCATCTAGATTTAAAAGAAAGTCTCCCCCAGCTTCGTCAGATCAAACTTCCAAGGCCCATCGTCTGGCCTCGGGGCAAGCTACCACCCTCCCATTGTGCGGCTCATGCAACAAGCGTCACTTGGAGCAGTGCTGGCTAGGCCAGAGCATTTGCTTTAAGTGTGGAAAGGAAGGAGGGAAACAAAAGGCACGCGTCTTTGCACTGAAGAAGGAGGAGGCTGCAGATACGAACGCAATGGTTACAGCGCCTTATTATCAAATGATCTGTGGAGAGATGAGAAGCAATGAAATGGGGAGAGCAACGTTGATGTTTTCAGCGTTTTCTCCTTTCCTGCGCTTAATTTTGGCTATGGCTTTCGTTTTACGGGTGTCTGCAAATGGGGAAGGTGATGCCCTAAATGCCTTCAAGTTGAGTTTGGTTGACCCCAACAATGTCTTGCAAAGTTGGAATACCATTCTTATGAATCCTTGCACATGGTTTCATGTTACATGTGATGAAAAAGAAAGTGTTATACGTGTTGATCTTGGTAATGCCAATCTGTCTGGAAAACTGGTTCCACAGCTTGATCAACTCACAAACTTGCGGTACTTGGAACTCTACAGCAATAATATCAGCGGAACAATTCCAGAAAGATTTGGAAATTTGAAAAACTTGGAGAGCTTGGATCTTTATTCTAACAGTTTAACTGGTCCCATACCTGACACACTGGGCAAACTTACAAAACTAAGTACCTTGCGTCTGAACAACAATAGCTTATCAGGAACCATTCCAATGTCTTTAACCACTGTTCCACTTCAACTTCTGGATCTTTCAAATAACCTTCTAACAGGAGACATTCCTGTCAATGGTTCGTTCTCTCTTTTCACACCAATCAGTTTTGCCAATAATCTTCTTCACATTTCTCCCTCTGCTCCTCCTCCGCCAACGAGAGATACACCACGAACATCTTCAGGTGATGGGGCTAATGGAGTCATTGTTGGAGCAATTGTTGCTGCTGCTGCTTTGCTGGTTGTTGTGCCTGCTACTGCACTTAATCTTTGGCGACGAAAAACTCAACAGGACCACTTCTTTGATGTAGCTGCTGAAGAAGATCCTGAAATTAACCTGGGCCAGCTCAAAAAATATTCTCTGGGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAGAACATTTTGGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGATTGAAGGAGCAGCCTGCTGAGGTTGGAGAGCTTCAATTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTCCATCGTAATCTACTCCGTCTAAATGGATTTTGCATATCACCAACTGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGTTTAAGAGAGCGTAAGCAATGCCAGCCGCCACTCAACTGGGAAATACGTAAACGAGTTGCTATAGGGGCTGCACAGGGACTTGAATATTTACATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTACTAGATGATGAATTTGAGGCTGTTGTTGGAGATTTTGGATTGGCTAAACTCATGAACTACAAGGATACTCATGTCACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCAGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAATCTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGATGACATCATGTTGCTTGATTGGGTAAAAGGACTTCTGAATGATAAGAAACTGGAAACGTTGGTCGATCCCAATCTCGAAGGCAATTACGTAGAGGAAGAACTGGAGCAGGTAATTCAAGTTGCACTGCTTTGCACGCAAAGCTCCCCTGTGGAGCGACCAAAGATGTCGGAGGTGTTGCAAATGCTGGAAGGAGATGGTTTGGCTGAAAGATGGGAAGAATGGCAGAAAGAAGAGAGCTCACGCCGAAACTTCAATAATATGGTTCATTCTTCCAACCACCGGAATAGAACTCCCCAGTTTATTGATTCCACTTCTCATATTGCTCCTGATGTGTTGTCTGGTCCAAGATAG 2829 45.14 MSHSPTSCVGTQSPIVTTSVCLIVCSSFLVVAAILSFLDQPLYLRHAAGRRFGRRFHPPPEATICSLESWLEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEASEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIKFLHLTELSCFAPDLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEVGASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEGGKQKARVFALKKEEAADTNAMVTAPYYQMICGEMRSNEMGRATLMFSAFSPFLRLILAMAFVLRVSANGEGDALNAFKLSLVDPNNVLQSWNTILMNPCTWFHVTCDEKESVIRVDLGNANLSGKLVPQLDQLTNLRYLELYSNNISGTIPERFGNLKNLESLDLYSNSLTGPIPDTLGKLTKLSTLRLNNNSLSGTIPMSLTTVPLQLLDLSNNLLTGDIPVNGSFSLFTPISFANNLLHISPSAPPPPTRDTPRTSSGDGANGVIVGAIVAAAALLVVVPATALNLWRRKTQQDHFFDVAAEEDPEINLGQLKKYSLGELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEQPAEVGELQFQTEVEMISMAVHRNLLRLNGFCISPTERLLVYPYMANGSLASCLRERKQCQPPLNWEIRKRVAIGAAQGLEYLHNHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKSDVFGYGVMLLELVTGQKAFDLARLAKDDDIMLLDWVKGLLNDKKLETLVDPNLEGNYVEEELEQVIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEESSRRNFNNMVHSSNHRNRTPQFIDSTSHIAPDVLSGPR 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27018344 27044268 - ClG42_09g0157900.10 Clacu09g1579 257887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1579 942 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 337 913 - -
Clacu09g1579 942 SUPERFAMILY L domain-like 354 526 - -
Clacu09g1579 942 SUPERFAMILY Protein kinase-like (PK-like) 596 889 IPR011009 -
Clacu09g1579 942 ProSiteProfiles Protein kinase domain profile. 614 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1579 942 MobiDBLite consensus disorder prediction 907 942 - -
Clacu09g1579 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1579 942 Pfam Leucine rich repeat 419 479 IPR001611 GO:0005515(InterPro)
Clacu09g1579 942 MobiDBLite consensus disorder prediction 910 932 - -
Clacu09g1579 942 Gene3D Phosphorylase Kinase; domain 1 583 690 - -
Clacu09g1579 942 Gene3D Ribonuclease Inhibitor 352 531 IPR032675 -
Clacu09g1579 942 FunFam Somatic embryogenesis receptor kinase 1 583 690 - -
Clacu09g1579 942 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524(InterPro)
Clacu09g1579 942 MobiDBLite consensus disorder prediction 218 247 - -
Clacu09g1579 942 Gene3D Transferase(Phosphotransferase) domain 1 691 908 - -
Clacu09g1579 942 SMART serkin_6 614 888 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1579 942 Pfam Protein tyrosine and serine/threonine kinase 616 888 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1579 942 Pfam Leucine rich repeat N-terminal domain 353 392 IPR013210 -
Clacu09g1579 942 FunFam Somatic embryogenesis receptor kinase 1 351 536 - -
Clacu09g1579 942 Pfam Retrotransposon gag protein 102 161 IPR005162 -
Clacu09g1579 942 MobiDBLite consensus disorder prediction 233 247 - -
Clacu09g1579 942 FunFam Somatic embryogenesis receptor-like kinase 1 691 908 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1453 Clacu-Chr1:26463159 Clacu09g1579 Clacu-Chr9:27018344 3.30E-09 dispersed
Clacu02g0839 Clacu-Chr2:9907937 Clacu09g1579 Clacu-Chr9:27018344 1.50E-34 dispersed
Clacu03g0923 Clacu-Chr3:11810870 Clacu09g1579 Clacu-Chr9:27018344 1.10E-06 dispersed
Clacu08g0459 Clacu-Chr8:7191733 Clacu09g1579 Clacu-Chr9:27018344 6.70E-192 dispersed
Clacu09g1579 Clacu-Chr9:27018344 Clacu11g0656 Clacu-Chr11:6304090 2.70E-120 dispersed
Clacu11g1062 Clacu-Chr11:13203052 Clacu09g1579 Clacu-Chr9:27018344 2.70E-50 dispersed
Clacu11g1236 Clacu-Chr11:20378096 Clacu09g1579 Clacu-Chr9:27018344 8.90E-19 dispersed
Clacu09g1579 Clacu-Chr9:27018344 Clacu10g0924 Clacu-Chr10:19182386 5.30E-209 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73833 PF00069 Pkinase 1.00E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1579 K13416 - csv:101216386 1009.98