Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1592 ATGAGCGGACGAATCGTGAGCGATGAAGGAATGGGACAAGCAGAGCAGAGAAACGAAGCGTTGAACATTGCATCACCCTCAAAGGTGGGTGTGCCGCCGAAGAAGAACGTGTGGGAAGAGTTTAATTCTGTGGTGAAAGAGACGTTTTTCTCTGATCAGCCTCTTCGTCATTTCAAAGACCAACCTATGCATAAGAAGGTTGCTCTCTTTGTCCAAGGTCTCTTCCCCATATTCCAATGGGGAAGGGGATATAACTTTAGTAAGTTCAAAGGGGATCTCATTGCTGGCTTAACCATTGCTAGTCTCTGCATTCCTCAAGACATTGGATATGCCAAGCTCGCTAATTTACCTCCTGAAAATGGACTTTATAGTAGTTTTGTCCCGCCGTTGGTATACGCGGTGATGGGGAGCTCTAGGGATATTGCAATCGGCCCCGTTGCTGTGGTGTCGCTTTTGCTGGGGACCCTGCTAGGGCAGGTGTACGACCCGGTTAAAGAGGTGGAGCAATACAAACGGCTGGCTTACACCGCAACTTTCTTCGCCGGAGTAACTCAGTTGGCTCTAGGGTTCCTCCGGCTCGGATTCTTGATTGACTTTCTGTCGCACGCGGCGGTTGTCGGGTTCATGGGAGGTGCGGCCGTCACCATCGCCCTTCAGCAGCTGAAAGGTCTTCTTGGCATAGTAAACTTCACCAAGAAAACTGATATAATTTCTGTAATGCGCTCTGTTTGGAGTAATGTGCACCATGGGTGGAACTGGGAGACTATACTCATAGGCGTTTCATTTCTGGCCTTTCTTTTGGCTACAAAATACATTGGCAAGAAATACAAGAAACTGTTCTGGATTCCAGCCATTGCCCCCTTAACATCTGTTATACTTTCCACATTTTTGGTGTACATTACTCGAGCAGATAAACATGGAGTTCAGATTGTAAGACACTTAGATAAAGGAATAAATCCACCATCCCTTGATAAGATATTCTTCCATGGAGACGATCTCACCCAAGGTTTCAAGATTGGAGTGGTTGCTGGTTTGATTGGCCTAACGGAAGCAGTGGCAATTGCAAGAACATTTGCAGACCTAAAAGACTATGAGATTGACGGTAACAAAGAAATGATGGCTCTTGGAACCATGAACATTGCTGGCTCCATGACTTCTTGCTATGTAGCCACAGGATCGTTCTCTCGGTCGGCGGTGAACTACATGGCCGGCTGCAACACACCGATGTCGAACATCGTCATGGCATGCGTCGTTCTCTTGACATTAGAGCTCATCACGCCCCTTTTCAAGTACACCCCTAATGCCATTCTCGCCTCCATCATTATTTGTGCCGTCATCGGTCTCATTGACATCGATGCCGTGATTTTGCTTTGGAAGATCGACAAATTCGACTTCATTGCCTGCATGGGGGCTTTCTTCGGTGTCATCTTTGATTCCGTTGAGATTGGTCTTCTCATTGCTGTTAGTTTGTCATTGTCCAAAATTCTATTGCAAGTAACAAGACCGAGAATTGCGTTGCTTGGGAAGCTCCCAAAGATTCCTATTTTTAGAAACATTTTGCAGTACCCTGGGGCAAAGAAGATTGCAGGAGTTCTAATGGTTAGGGTTGATTCTTCAGTATACTTCTCCAATGCCAATTATGTCAAAGAAAGGATACTGAGATGGCTGGCAGATGAAACAGAGAAGCTAGAAGACCAATCTTTGCCAATCAAAGTCGTGGTCGTCGACATGTCTCCCGTATCCGATATCGACACGAGTGGCATCCATGCCTTGGAGGGTTTGCACTCTCATTTGCATAAGAAGGAAATTGCCCTTGCACTTGCAAATCCAGGCCCAGTGATCATGGAGAAGCTCTTAGCTTCAAACTTTGATAAGCTCATTGGAGAAGACAACATTTTCCTCAGTGTTAACGAAGCTATTAAGATTTATGCTCCAGATGCTGTTCTTGATCCTTAA 1956 45.86 MSGRIVSDEGMGQAEQRNEALNIASPSKVGVPPKKNVWEEFNSVVKETFFSDQPLRHFKDQPMHKKVALFVQGLFPIFQWGRGYNFSKFKGDLIAGLTIASLCIPQDIGYAKLANLPPENGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLGQVYDPVKEVEQYKRLAYTATFFAGVTQLALGFLRLGFLIDFLSHAAVVGFMGGAAVTIALQQLKGLLGIVNFTKKTDIISVMRSVWSNVHHGWNWETILIGVSFLAFLLATKYIGKKYKKLFWIPAIAPLTSVILSTFLVYITRADKHGVQIVRHLDKGINPPSLDKIFFHGDDLTQGFKIGVVAGLIGLTEAVAIARTFADLKDYEIDGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCNTPMSNIVMACVVLLTLELITPLFKYTPNAILASIIICAVIGLIDIDAVILLWKIDKFDFIACMGAFFGVIFDSVEIGLLIAVSLSLSKILLQVTRPRIALLGKLPKIPIFRNILQYPGAKKIAGVLMVRVDSSVYFSNANYVKERILRWLADETEKLEDQSLPIKVVVVDMSPVSDIDTSGIHALEGLHSHLHKKEIALALANPGPVIMEKLLASNFDKLIGEDNIFLSVNEAIKIYAPDAVLDP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27444859 27451729 + ClG42_09g0159200.10 Clacu09g1592 257900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1592 651 NCBIfam sulfate permease 76 639 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g1592 651 Pfam Sulfate permease family 89 470 IPR011547 GO:0016020(InterPro)
Clacu09g1592 651 Pfam STAS domain 523 639 IPR002645 -
Clacu09g1592 651 SUPERFAMILY SpoIIaa-like 526 642 IPR036513 -
Clacu09g1592 651 PANTHER SULFATE TRANSPORTER 64 641 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g1592 651 FunFam Sulfate transporter 31 501 645 - -
Clacu09g1592 651 Gene3D STAS domain 516 646 IPR036513 -
Clacu09g1592 651 CDD STAS_SulP_like_sulfate_transporter 522 636 - -
Clacu09g1592 651 ProSiteProfiles STAS domain profile. 521 643 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0891 Clacu-Chr3:11037732 Clacu09g1592 Clacu-Chr9:27444859 7.50E-165 dispersed
Clacu09g1592 Clacu-Chr9:27444859 Clacu11g0272 Clacu-Chr11:2458052 7.00E-176 dispersed
Clacu09g1592 Clacu-Chr9:27444859 Clacu11g1713 Clacu-Chr11:28382739 4.00E-248 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1592 K17470 - csv:101202746 1178.31