Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1599 ATGACAAAACTTCGTTTTAATTCAATGCTCGTCTTGGTTGTGTCTGTCGCGGTGATATTCACCTTTTGTAGCACTCTCGTGCATGGCCAAGCTACACGCATTGGCTTCTACTCCAACTCTTGCCCTCAAGTCGAGTCCATTATTGCATCAACAGTCCGATCTCATTTTCAATCTGACCCTAGAATTGCTCCAGGTTTGTTAAGAATGCACTTCCATGACTGTTTCGTTCGGGGTTGTGATGCTTCTGTGCTTCTTGCTGGCTCCAATAGCGAGAGGACTGCGCCGCCCAACCTTTCGTTAAATGGGTTTGAAGTGATTGATGATGCTAAGTCTCAGCTCGAAGCTGCTTGTCCTGGCATTGTATCTTGTGCTGACATTCTTGCTCTTGCCGCCCGTGACTCTGTAGTTTTGACAAGTGGACTACGTTGGTCAGTGCCCACAGGACGAAGAGATGGCACAATTTCTTTGGCTTCAGAAGCTAACAACTTGCCTGGATTTACAGATTCAATTGACGTTCAAAAGCAAAAATTTAGCGACAAAGGTCTCAACACTCAAGATCTTGTCACTCTTGTGGGTGGACACACAATTGGCACAACACAATGCCAATTTTTCAACTACAGACTCTTCAACTTCACAAACAATGGACCAGATCCAAGCATGGACCCAGCGTTCGTGACTCAGATGCAAGCGCTGTGCCCTCAGAACGGCGACGGTAGCCGCAGGGTTGCATTGGACACAGGCAGCGCCGGGCGGTTCGACACCATGTTCTTCTCAAACTTGAGGAACGGACGTGGGGTTTTGGAGTCTGATCAAAAGCTATGGACCGACGCTTCCACTCGCACTTTTGTCCAACGCTTTCTGGGTTTGAGAGGCGTCTTGGGTTTGACCTTCAATCTTGAGTTTGGGAAATCTATGGTTAAGATGAGTAACATTGAAGTTAAGACTGGAACTCAAGGAGAAATTCGGAAAGTTTGTTCTGCAGTTAACTAA 990 46.87 MTKLRFNSMLVLVVSVAVIFTFCSTLVHGQATRIGFYSNSCPQVESIIASTVRSHFQSDPRIAPGLLRMHFHDCFVRGCDASVLLAGSNSERTAPPNLSLNGFEVIDDAKSQLEAACPGIVSCADILALAARDSVVLTSGLRWSVPTGRRDGTISLASEANNLPGFTDSIDVQKQKFSDKGLNTQDLVTLVGGHTIGTTQCQFFNYRLFNFTNNGPDPSMDPAFVTQMQALCPQNGDGSRRVALDTGSAGRFDTMFFSNLRNGRGVLESDQKLWTDASTRTFVQRFLGLRGVLGLTFNLEFGKSMVKMSNIEVKTGTQGEIRKVCSAVN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27754653 27756655 + ClG42_09g0159900.10 Clacu09g1599 257907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1599 329 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 CDD secretory_peroxidase 33 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu09g1599 329 SUPERFAMILY Heme-dependent peroxidases 33 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PANTHER PEROXIDASE 25-RELATED 20 325 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu09g1599 329 Gene3D Peroxidase, domain 2 164 308 - -
Clacu09g1599 329 FunFam Peroxidase 35 177 - -
Clacu09g1599 329 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Clacu09g1599 329 FunFam Peroxidase 164 308 - -
Clacu09g1599 329 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 Gene3D - 36 329 - -
Clacu09g1599 329 ProSiteProfiles Plant heme peroxidase family profile. 31 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1599 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Clacu09g1599 329 Pfam Peroxidase 49 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1246 Clacu-Chr1:20864889 Clacu09g1599 Clacu-Chr9:27754653 2.40E-68 dispersed
Clacu06g1198 Clacu-Chr6:22553553 Clacu09g1599 Clacu-Chr9:27754653 5.90E-107 dispersed
Clacu06g1200 Clacu-Chr6:22572875 Clacu09g1599 Clacu-Chr9:27754653 4.30E-106 dispersed
Clacu08g1576 Clacu-Chr8:25585299 Clacu09g1599 Clacu-Chr9:27754653 1.90E-65 dispersed
Clacu09g0473 Clacu-Chr9:4108728 Clacu09g1599 Clacu-Chr9:27754653 3.50E-62 dispersed
Clacu09g1563 Clacu-Chr9:26397219 Clacu09g1599 Clacu-Chr9:27754653 4.20E-76 dispersed
Clacu09g1599 Clacu-Chr9:27754653 Clacu11g0922 Clacu-Chr11:8884020 2.60E-62 dispersed
Clacu09g1599 Clacu-Chr9:27754653 Clacu09g1600 Clacu-Chr9:27787526 3.00E-119 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1599 K00430 - csv:101217567 574.704