Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1643 ATGGACGATCCTCCTACTAGTCCCCTCAAGGCCTTCGCTACGTTTCTAATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAATTCGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTGTCTTCTCCCGTCCGACCGACTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATAAGATCATTTTGGGTGATTCGAAAGGTTCCATGAATGGAATTGAGAAATATTTCATCCATGTTCGTATTAACGTCATTGGCTCCCCGCTGGAATTGCCTGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACCGTAATCCGATCTGGGGCAATTAAGATGTATGAGGGTAAGAGGTGGTATATCTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTCGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGGTCCATTCCTCGTTCCATTCTGGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGGAGTATTGAGTGCAAAGTGGTCTCCAGACCTCAAAGATGTTCGTTGTGACCTTGATCCAATGCTTATTGCTAATCATGTGAGAAGAACCAATGAACTAAAGGCTGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCCATTTTGAGAGGCATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATTTCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCGGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTGATTACCACTGGATTAGGAAGCACTAGCGCAGGACTGACTGTTGCTGCTGTTAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACAATCCATGAAGCAATGGAACAACAGACTATAAGTGTCGCAAAGGCTGGTCTTGTCACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTACGACCCTGAACAACCGCTCTCTGTCAATACAACGCTCTCCGGTCCCTTATTGAGTAGATTTGATATCGTTCTTGTGCTTTTAGATACAAAAAACCCTGAATGGGATGCAGTTGTTTCATCTCATATTCTCTCTGAGTATGAACAAGAAAACGGAAAGCATGACAATGACCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACTAAGGAAGCTGAGCAAATTATTTCAAACTATTATCAGCTTCAAAGAAGATCAGCCATGGATAATGCAGCCAGGACAACAGTACGTATGCTTGAAAGCTTGATACGGTTAGCACAAGCACATGCACGCCTTATGTTTAGAAATGAGGTTACCCGGCTCGATGCCATTACGGCTATTTTGTGCATCGAATCATCCATGACGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATATGCAAAGCAAGAAATTTTAATACTTGAGAAGCTCAAATCGATGGACGAATAG 1941 44.0 MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKHKFPVYPELETRNSIQLPSFCPSQRSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEYEQENGKHDNDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSALVDSVGNALHSNFTENPDEEYAKQEILILEKLKSMDE 646
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 28958514 28980982 + ClG42_09g0164300.10 Clacu09g1643 257951
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1643 646 CDD MCM9 300 604 - -
Clacu09g1643 646 FunFam Probable DNA helicase MCM9 275 609 - -
Clacu09g1643 646 Gene3D - 117 237 IPR012340 -
Clacu09g1643 646 Gene3D - 280 610 IPR027417 -
Clacu09g1643 646 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 10 634 IPR031327 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Clacu09g1643 646 PRINTS Mini-chromosome maintenance (MCM) protein family signature 338 353 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu09g1643 646 PRINTS Mini-chromosome maintenance (MCM) protein family signature 396 410 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu09g1643 646 PRINTS Mini-chromosome maintenance (MCM) protein family signature 447 459 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu09g1643 646 PRINTS Mini-chromosome maintenance (MCM) protein family signature 424 437 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu09g1643 646 PRINTS Mini-chromosome maintenance (MCM) protein family signature 474 482 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu09g1643 646 Pfam MCM AAA-lid domain 523 604 IPR041562 -
Clacu09g1643 646 ProSiteProfiles MCM family domain profile. 297 500 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu09g1643 646 Gene3D - 142 198 - -
Clacu09g1643 646 SMART AAA_5 339 488 IPR003593 GO:0016887(InterPro)
Clacu09g1643 646 Pfam MCM P-loop domain 299 503 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu09g1643 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 608 IPR027417 -
Clacu09g1643 646 SUPERFAMILY Nucleic acid-binding proteins 36 246 IPR012340 -
Clacu09g1643 646 Pfam MCM OB domain 117 237 IPR033762 -
Clacu09g1643 646 SMART mcm 111 606 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1643 Clacu-Chr9:28958514 Clacu10g1298 Clacu-Chr10:25935675 2.40E-67 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1643 K10738 - csv:101205171 1220.3