Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu09g1643 | ATGGACGATCCTCCTACTAGTCCCCTCAAGGCCTTCGCTACGTTTCTAATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAATTCGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTGTCTTCTCCCGTCCGACCGACTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATAAGATCATTTTGGGTGATTCGAAAGGTTCCATGAATGGAATTGAGAAATATTTCATCCATGTTCGTATTAACGTCATTGGCTCCCCGCTGGAATTGCCTGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACCGTAATCCGATCTGGGGCAATTAAGATGTATGAGGGTAAGAGGTGGTATATCTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTCGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGGTCCATTCCTCGTTCCATTCTGGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGGAGTATTGAGTGCAAAGTGGTCTCCAGACCTCAAAGATGTTCGTTGTGACCTTGATCCAATGCTTATTGCTAATCATGTGAGAAGAACCAATGAACTAAAGGCTGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCCATTTTGAGAGGCATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATTTCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCGGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTGATTACCACTGGATTAGGAAGCACTAGCGCAGGACTGACTGTTGCTGCTGTTAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACAATCCATGAAGCAATGGAACAACAGACTATAAGTGTCGCAAAGGCTGGTCTTGTCACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTACGACCCTGAACAACCGCTCTCTGTCAATACAACGCTCTCCGGTCCCTTATTGAGTAGATTTGATATCGTTCTTGTGCTTTTAGATACAAAAAACCCTGAATGGGATGCAGTTGTTTCATCTCATATTCTCTCTGAGTATGAACAAGAAAACGGAAAGCATGACAATGACCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACTAAGGAAGCTGAGCAAATTATTTCAAACTATTATCAGCTTCAAAGAAGATCAGCCATGGATAATGCAGCCAGGACAACAGTACGTATGCTTGAAAGCTTGATACGGTTAGCACAAGCACATGCACGCCTTATGTTTAGAAATGAGGTTACCCGGCTCGATGCCATTACGGCTATTTTGTGCATCGAATCATCCATGACGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATATGCAAAGCAAGAAATTTTAATACTTGAGAAGCTCAAATCGATGGACGAATAG | 1941 | 44.0 | MDDPPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSRPTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVIGSPLELPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGKRWYICRKCKHKFPVYPELETRNSIQLPSFCPSQRSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEYEQENGKHDNDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSALVDSVGNALHSNFTENPDEEYAKQEILILEKLKSMDE | 646 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 28958514 | 28980982 | + | ClG42_09g0164300.10 | Clacu09g1643 | 257951 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu09g1643 | 646 | CDD | MCM9 | 300 | 604 | - | - | |
| Clacu09g1643 | 646 | FunFam | Probable DNA helicase MCM9 | 275 | 609 | - | - | |
| Clacu09g1643 | 646 | Gene3D | - | 117 | 237 | IPR012340 | - | |
| Clacu09g1643 | 646 | Gene3D | - | 280 | 610 | IPR027417 | - | |
| Clacu09g1643 | 646 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 10 | 634 | IPR031327 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| Clacu09g1643 | 646 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 338 | 353 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu09g1643 | 646 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 396 | 410 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu09g1643 | 646 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 447 | 459 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu09g1643 | 646 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 424 | 437 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu09g1643 | 646 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 474 | 482 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu09g1643 | 646 | Pfam | MCM AAA-lid domain | 523 | 604 | IPR041562 | - | |
| Clacu09g1643 | 646 | ProSiteProfiles | MCM family domain profile. | 297 | 500 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu09g1643 | 646 | Gene3D | - | 142 | 198 | - | - | |
| Clacu09g1643 | 646 | SMART | AAA_5 | 339 | 488 | IPR003593 | GO:0016887(InterPro) | |
| Clacu09g1643 | 646 | Pfam | MCM P-loop domain | 299 | 503 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu09g1643 | 646 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 307 | 608 | IPR027417 | - | |
| Clacu09g1643 | 646 | SUPERFAMILY | Nucleic acid-binding proteins | 36 | 246 | IPR012340 | - | |
| Clacu09g1643 | 646 | Pfam | MCM OB domain | 117 | 237 | IPR033762 | - | |
| Clacu09g1643 | 646 | SMART | mcm | 111 | 606 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu09g1643 | Clacu-Chr9:28958514 | Clacu10g1298 | Clacu-Chr10:25935675 | 2.40E-67 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu09g1643 | K10738 | - | csv:101205171 | 1220.3 |