Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1653 ATGCCGTCAAAGGGAAAGAAGAACCCAAAGACACTCTCTAGATTGTCAAACTCCAGCCACTCTCCATCTCCAGTGCCACGATTGACAATACCTCCTGCCTCCGAAGTTTGTGAAGATGAGTTTCTTTCCTCTATTGAAGAAGCTTCAAGTAAATATCCTTCTTTGATTGGTAAATCTGCTTTTGTTGGGAGAGTTACTAGTGCTCCAGTTCAATCTACTGGCTGTAAAGTTTGGCTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACTCAAGGGGCTATTGTCTCGGTAGCACTTAGTTCCGAGGGAGGTAACAATTTAAAAGGCTTTCCTCTGTCCTCGTTAGCAGATGAATGCGGTAGGCACTTTGGGGTTGATCCTGGAGATTCAATAATCCATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCTTCTAGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAAACCTCTCATTTACCTTGGGTTGCCCTGAAAGTGGTCGTGTGGTGTTTATCTTCCCTATAAAAGCCCACCTATGCAATGATCCATTAAATGATAATGTGGAATTGAAGAGCACAGAAGTTGAATCTCTGAGAATAATCAATTGTAAGGAACTATTCCTGGATCTATCTTGTTCATCCAATATATCAACAAAAGACAACCTATTCTCTTCTTCAACTATTTATTCAAGAAAGGTTCATGGTTATAGTGAAAATGGTAATTTAACATCCCCAAGCACCATGTTGTCTGTATCTCCTAAATGTGATGACGTGGTATCAAATTTACTTGTAGACAGTCCATGTGCTCATTCACTTATTAAGGAGGCCTTAGAAGATGATAGTGTTAGAAAAACTCTACAGACGATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTTCGTGTGAGAGGTGGTAAAGGACTGTTGGGATATGATGACTCTTATAATTCTATGCACAGTGGAAGTGACGATCATTTTCAACATTTTTCATCAAATGAATATGTGGACTATGCTTTCAATATAGACCAGCTGACAAAAGTATTTATAAATGTTCAATCAACCATGGTCTCAGAGACAGTGCAAGAAAGAGTTCCATCAAATGTGGAACCTCAAAATCTAAATATTAGAGCTAAAGTAAAGCCTAAAGTTTGGAAATTGGGTGGTCTTTCAAAAGAATATGCAGTTTTGAAGGATATTATAATTGCTTCATCATTAAATAGCACTGTGTCCAGCCTCGGTTTACGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATCTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGACGTTTTTGAGGTGGCAAGCCAAGCTGCACCTGCCGTGATATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAGGATGGAGGTGAAGAGCTGTCGCAAAGAATTGTTGCTACATTGCTCAATCTAATGGATGGGATCAATCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGACCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGATCGGGAAATTGAAATAGGTGTGCCATCTCCTAACCAGCGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTTGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTTGTAGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCATGAGTTTAGAGTTTCTTCTGATTGCCTTAGTTCTGGTAGATCTGTTGTAGCAGAGGAACAACACAAGTTTACTGAGGTGGATCACAAAGCCAATGTCGATCATATGATTTTGGAACCTGTTCTCTCACAAGACGCAAGAAGTAAATCAGGCGTTTGCCCAAACCTTGCATCTTCGTCAATCTCTGAGCATACTTTTACATCTGACCCGCTAACATGTGTGTCCTCAAATGAAGTGGTTGCTGATAGTGAGGATATTTTAAACTCTTCCGAAATCAAGGGTAGATTGAAGGTTGTTTTTGAAGACTTTGAGGTGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAATTGGAGGTTAAGGCTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTGATGGCACGTGCGGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGGGCTAATGCCCCATCAATTGTATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTGTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAAATGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCTAGCCCTCCTAAGGCCAGGACGTTTTGATCGATTGCTTTATGTTGGGCCCCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACTAGGAAGTTGGCGTCTCTTACTCAAGGGTGTACAGGGGCTGACATATCATTAATTTGCAGAGAATCAGCTTTATTTGCCCTCGAGGAGAACCTTGAGGCTTCAAGAATAAATATGAAACATTTAGAAACTGCAGCTAGACACGTGAAGCCATCTGAAACTGAACCTTACCGAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGTTAATGTCGTCTGTCAGCAGTCGCGATCTAACTGGTTTTCTTTTTGGCCCCTTGTAAAATCTGCTGTGTTAGTTTTTTATCGGGAATTGTTTGTCATGGAACTTAATCAAGAAAAAGCACTTGAAAACCGATCCTATGACTGCAACACCAATCCAAAATTTTGA 3228 41.33 MPSKGKKNPKTLSRLSNSSHSPSPVPRLTIPPASEVCEDEFLSSIEEASSKYPSLIGKSAFVGRVTSAPVQSTGCKVWLSESSMVASSFTQGAIVSVALSSEGGNNLKGFPLSSLADECGRHFGVDPGDSIIHEAGNYFALARIFSSSKELNDGVQLSTNLSFTLGCPESGRVVFIFPIKAHLCNDPLNDNVELKSTEVESLRIINCKELFLDLSCSSNISTKDNLFSSSTIYSRKVHGYSENGNLTSPSTMLSVSPKCDDVVSNLLVDSPCAHSLIKEALEDDSVRKTLQTIASNELYKRCLLRGNLVTIPVLSDLCTFRVRGGKGLLGYDDSYNSMHSGSDDHFQHFSSNEYVDYAFNIDQLTKVFINVQSTMVSETVQERVPSNVEPQNLNIRAKVKPKVWKLGGLSKEYAVLKDIIIASSLNSTVSSLGLRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEVASQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHEFRVSSDCLSSGRSVVAEEQHKFTEVDHKANVDHMILEPVLSQDARSKSGVCPNLASSSISEHTFTSDPLTCVSSNEVVADSEDILNSSEIKGRLKVVFEDFEVARMKVRPSAMREVILEVPKVKWEDIGGQLEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVEMDGLHQRVGVTVIAATNRPDKIDLALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICRESALFALEENLEASRINMKHLETAARHVKPSETEPYRELSSRFQRLVCSSSQEVNVVCQQSRSNWFSFWPLVKSAVLVFYRELFVMELNQEKALENRSYDCNTNPKF 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29166834 29180441 - ClG42_09g0165300.10 Clacu09g1653 257961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1653 1075 Gene3D - 570 694 - -
Clacu09g1653 1075 SMART AAA_5 436 572 IPR003593 GO:0016887(InterPro)
Clacu09g1653 1075 SMART AAA_5 787 925 IPR003593 GO:0016887(InterPro)
Clacu09g1653 1075 MobiDBLite consensus disorder prediction 1 31 - -
Clacu09g1653 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 625 IPR027417 -
Clacu09g1653 1075 CDD RecA-like_CDC48_NLV2_r1-like 405 568 - -
Clacu09g1653 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 998 IPR027417 -
Clacu09g1653 1075 MobiDBLite consensus disorder prediction 9 24 - -
Clacu09g1653 1075 Pfam ATPase family associated with various cellular activities (AAA) 791 922 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu09g1653 1075 Pfam ATPase family associated with various cellular activities (AAA) 440 569 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu09g1653 1075 ProSitePatterns AAA-protein family signature. 893 911 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu09g1653 1075 Gene3D - 748 995 IPR027417 -
Clacu09g1653 1075 ProSiteProfiles Plant heme peroxidase family profile. 440 768 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu09g1653 1075 FunFam calmodulin-interacting protein 111 isoform X1 748 923 - -
Clacu09g1653 1075 Gene3D - 924 994 - -
Clacu09g1653 1075 Gene3D - 387 569 IPR027417 -
Clacu09g1653 1075 FunFam Putative vesicular transport protein (CDC48) 391 569 - -
Clacu09g1653 1075 FunFam spermatogenesis-associated protein 5-like protein 1 924 1007 - -
Clacu09g1653 1075 Pfam AAA+ lid domain 945 990 IPR041569 -
Clacu09g1653 1075 Pfam AAA+ lid domain 594 634 IPR041569 -
Clacu09g1653 1075 Coils Coil 972 992 - -
Clacu09g1653 1075 CDD RecA-like_CDC48_r2-like 762 921 - -
Clacu09g1653 1075 PANTHER AAA-FAMILY ATPASE 75 1012 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1653 Clacu-Chr9:29166834 Clacu10g1991 Clacu-Chr10:33434769 3.40E-119 dispersed
Clacu09g1653 Clacu-Chr9:29166834 Clacu04g0976 Clacu-Chr4:23940484 2.00E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1653 - - - 0.0