Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1690 ATGTTGCAGTCTTCGATTCGGCGAGTGAGGAAGTTGAATGTTCTGAGGCCTCAGATCTTTGCTCTCGGAAATTCTCGTTTCTCCACTTTTGCTCAACCGTCTTCCAAGCCTCATCCTCCGAGGGTTCCAAATCTCATAGGAGGGACTTTTGTGGATTCTCAATCCTCGGCATTCATAGATGTCATAAACCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGATGAATTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCATAATACTCCAGTTACAACTCGTCAACGAATTATGTTCAAGCTTCAAGAACTTATTAGGCGAGATATAGACAAACTTGCTCTGAATATTACCACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCGAATGTGTCACATGGAATTGATACCTACAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAATTTTCCAGCCATGATCCCCCTATGGATGTTCCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTGCAGTCCAATATGGGTGCAAAAAATCATGCAATTGTCTTGCCCGATGCCAGCATAGATGCTACTTTGAATGCTTTGGTTGCTGCAGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCACTTAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAGGATAAACTTGTAGAACGTGCCAAAACTCTGAAGGTAAACTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGATAGGATTCACAGATTGGTTCAATCTGGCATCGATAGTGGAGCCAGGCTACTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGAGTGGAAATTTTATTGGCCCTACTATCTTAACAGATGTGACGCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAGAGTTTAGAGGAGGCCATTAGCATCGTTAACGGAAATAGGTACGGGAATGGAGCTTCCATATTCACAACATCTGGGATAGCGGCGAGGAAGTTTCAAACGGATATTGAAGCCGGACAGGTTGGGATCAATGTTCCAATTCCGGTTCCCTTGCCCTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTATGGCAAGGCTGGGGTCAACTTCTTCACACAGATCAAAACAGTGACACAACAATGGAAAGACTCAGCTGGGGGAACTGCAGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAG 1614 44.49 MLQSSIRRVRKLNVLRPQIFALGNSRFSTFAQPSSKPHPPRVPNLIGGTFVDSQSSAFIDVINPATQEVVSQVPLTTNDEFKAAVSAAKQAFPAWHNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKTLKVNSGTEPDADLGPVISKQAKDRIHRLVQSGIDSGARLLLDGRNIVVPGYESGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAESLEEAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSAGGTAVNLAMPTSLKS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30345801 30354341 - ClG42_09g0169000.10 Clacu09g1690 257998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1690 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491(InterPro)
Clacu09g1690 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 6 534 IPR010061 GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Clacu09g1690 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 518 IPR010061 GO:0004491(InterPro)
Clacu09g1690 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491(InterPro)
Clacu09g1690 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491(InterPro)
Clacu09g1690 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491(InterPro)
Clacu09g1690 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620(InterPro)
Clacu09g1690 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 287 487 - -
Clacu09g1690 537 SUPERFAMILY ALDH-like 35 519 IPR016161 GO:0016491(InterPro)
Clacu09g1690 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 46 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1896 Clacu-Chr1:31088343 Clacu09g1690 Clacu-Chr9:30345801 1.10E-192 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1690 K00140 - csv:101204924 1013.83