Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1720 ATGGCTGCCCCAATCCCCATTTTCATTTTTCTTCTTCCTCTGGTATTCTTCATCAACATCTTGTCATTCTTCTCTGCACTTACACTTTCAAGTTCTTTATCTTTCAACTTCACCTCTTTCGATTCAAGTAATACCCACATCTTCTACGAGAGAGCATTCCCATCAAATCGAACAATCAAACTCACAGGAGAAAGGGTTAATAGTAACCAAAATTTCTCTGGACGAGCAACTTACTTCAAGCCCTTGCATCTTTGGGACAAAGCCTCTGGGAATCTTTCAAGTTTCCGAACTCATTTCTCCTTCGCCATTGATTCAGAAGGAGCAGAAAGGTACGGAGATGGGCTTACATTCTTCTTTGCTCCTAATAATTCTAGGCTTGATGATGAGATCTCAAAGGGCAGTGGATTGGGGATTGGGTTTAACCCCAGTTTGACAAATTTAACATATAGTTCCTTTTTTGCAGTTGAGTTTGATATCTTTAGCAATTACTTTGATCCACCTGAAAAACTAGAACATGTAGGTATTGATATCAATTCAATGGCTTCTGTTGCTTATTCAGTATGGAAATGTGATATTAGGAGAGGGAAGAGAACTGATGTTTGGATTAATTATGATTCTGTTACTTTGAATTTGAGTGTTACTTTCACTGGAGGTTTCTTAAGGGACTTAAATTGCTATGTCGCTGTGAAGAAAGTATCAAAAGGGTCTAGACAAGGACTAAAAGAGTATGCATCTGAGGTGAAAATCATTAGCCAATTGAGACATAGAAACTTAGTGCAACTCTTGGGTTGGTGTCATGAAAGAGGTGAGCTTTTGCTGGTTTATGAATTCATGTCAAATGGAAGCTTAGATGCCCATCTTTTCAAAGAAAACAACTTCTTAACATGGGAATTTCGATACAAAGTTGCTCGAGGTATTGCCTCGGCTCTGCTATATCTACATGAAGAGTGGGAAAAATGTGTGCTGCATCGAGATATAAAGTCGAGCAATGTAATGTTGGATTCAGATTTCAATGCAAAGCTTGGAGATTTTGGGTTGGCTAGGCTAGTAGACCATGCCATAGGTTCACAAACAACAGTTCTTGCTGGAACAATGGGCTACTTGGCTCCTGAATGTGCTACAACAGGAAGAGCCAGTAAGGAATCAGATGTATTCAGCTTTGGGATTGTGGCTTTGGAAATTGCTTGTGGAAGAAGACCCTTTAATCCCAATGTAGAGGAAGACAAAATGGTGATGGTAGAGTGGGTTTGGAAACTTTATGGCCATGGAAGACTTCTTGAAGCAGCCGACTCGAAACTCCATGGAAGCTTGGAGGATGAACCGCAGCAGCAACAACAGATTGAGTGTTTGATGGTTGTTGATCACAGGTCATCGAAAATTCGTAAGGTTTATGTGAAAGCTCTAGCCTAG 1410 40.21 MAAPIPIFIFLLPLVFFINILSFFSALTLSSSLSFNFTSFDSSNTHIFYERAFPSNRTIKLTGERVNSNQNFSGRATYFKPLHLWDKASGNLSSFRTHFSFAIDSEGAERYGDGLTFFFAPNNSRLDDEISKGSGLGIGFNPSLTNLTYSSFFAVEFDIFSNYFDPPEKLEHVGIDINSMASVAYSVWKCDIRRGKRTDVWINYDSVTLNLSVTFTGGFLRDLNCYVAVKKVSKGSRQGLKEYASEVKIISQLRHRNLVQLLGWCHERGELLLVYEFMSNGSLDAHLFKENNFLTWEFRYKVARGIASALLYLHEEWEKCVLHRDIKSSNVMLDSDFNAKLGDFGLARLVDHAIGSQTTVLAGTMGYLAPECATTGRASKESDVFSFGIVALEIACGRRPFNPNVEEDKMVMVEWVWKLYGHGRLLEAADSKLHGSLEDEPQQQQQIECLMVVDHRSSKIRKVYVKALA 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30881889 30884987 + ClG42_09g0172000.10 Clacu09g1720 258028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1720 469 CDD lectin_legume_LecRK_Arcelin_ConA 35 216 IPR001220 GO:0030246(InterPro)
Clacu09g1720 469 ProSiteProfiles Protein kinase domain profile. 186 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1720 469 Gene3D Transferase(Phosphotransferase) domain 1 279 462 - -
Clacu09g1720 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1720 469 Gene3D - 30 215 - -
Clacu09g1720 469 Pfam Protein kinase domain 221 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1720 469 FunFam Lectin-domain containing receptor kinase A4.3 278 467 - -
Clacu09g1720 469 Pfam Legume lectin domain 32 216 IPR001220 GO:0030246(InterPro)
Clacu09g1720 469 SUPERFAMILY Protein kinase-like (PK-like) 223 443 IPR011009 -
Clacu09g1720 469 PANTHER - 59 215 IPR050528 GO:0005886(PANTHER)
Clacu09g1720 469 SMART serkin_6 214 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1720 469 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 217 IPR013320 -
Clacu09g1720 469 Gene3D Phosphorylase Kinase; domain 1 216 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1157 Clacu-Chr9:11098343 Clacu09g1720 Clacu-Chr9:30881889 3.00E-18 dispersed
Clacu09g1720 Clacu-Chr9:30881889 Clacu09g1755 Clacu-Chr9:31745561 5.70E-103 dispersed
Clacu09g1719 Clacu-Chr9:30876358 Clacu09g1720 Clacu-Chr9:30881889 1.20E-28 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73838 PF00069 Pkinase 3.60E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1720 - - - 0.0