Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1759 ATGCTAATTCATCTCTTTCTTTTCCTCTGTTTCACTCTTTCAGTCAACCCAATTTCTTTCAAAATAGATCAATTCCTATGGAACGAAGATCGAATAGCTTTTCAAGGAGATGCGTTTCTCTCTGATCGTGGGATTCAATTCAGCCACTCCGTTTATCATTGCCAAGTGGGTCAAGCAATCTACAGAGATATTGTTCCAATTTGGGACATTGAAAAAGGAAAACTCACTGATTTCTCCACCCATTTCGCCTTCTCTATTGATACCCAAAATAACAAAACATATGGCAGTGGGATTGTTTTCTTCTTAGCTCCAGTTGGGTTTCAAATCCCCATCAACTCAGCTGCAGGTTTCTTTGGCCTTTACAACAAAACTTACATGAATTCATCCCAAAACCAAATTCTTCATGTTGAATTTGATTCTCATGCAGATCCTGATTGGGATCCTTCATATCAACATGTGGGTATAAACATTAACTCTGTTACTTCTTCTATTCTCACTCCTTTGAATGTTAGCTTTCACAGTGGAGACATTGCTGATGTGTGGATCTCCTACAATTCATTCACCAAAAATTTTACTGTCTCATGGAAATGGAAATCCACCTCGAATTCATTTGAAGATACCACCTTGAGTTATAAGATTGATTTAACCACGATTCTTCCTCAATGGGCGGTGGTGGGATTTGCAGGGGCAACAGGAACAAACTTCGAGAGACATACTCTGTTTTCATGGGAGTTCAACTCGAGCTTGGATATAAAGCAAACAAGTAAAAATAATGGGAATATAGTTAAAATAGTTGTGGGAGTAACGGTTTCAGTTGGAGTTTTTATTATTATAGTCATAGCAACAATATTTGTAGTAATGTGTAAATTGAAACAGAGGAAGAAAACAGGGGAGGAAGTAAATTTGACAAGCATGAACCAAGATTTGGAAAGAGAAGCTGGACCCAGAAGGTTTTCCAGCAAGCTTCTTGGGATGGCAACCAATAACTTCTCAAATGAAAGAAAGCTAGGGGAAGGAGGATTTGGAGCAGTGTACAGAGGGTACATACCAGACATAGATTTGACAGTGGCTGTGAAGAAAATCTCAAGGGGTTCAAGACAGGGGAGAAAAGAGTACATAACTGAAGTGAAGATCATTAGTCGGCTTCGCCATCGAAACTTGGTGCAACTCATTGGTTGGTGTCATGATAAGGGTGAGTTCTTGTTGGTTTATGAATTCATGCCAAATGGTAGTCTTGATTCTCATCTCTTTGGTAAGAGAACCCCTCTTGCTTGGGCTGTGAGATATAAGATTGCTTTAGGTTTAGCTTCTGCATTGCTATATCTCCATGAAGAATGGGAACAATGCGTGGTTCATAGAGACATTAAACCTAGCAATGTCATGTTAGATTCAAATTTCAATGCTAAATTGGGAGATTTCGGTCTAGCTCGATTAATGGACCACGAGTTGGGTGGTCAAACAACTAGGCTCGCAGGGACTTTTGGTTATTTAGCCCCTGAATATGTAACCACAGGCAGAGCTAGTAAAGAATCTGATATCTTTAGTTTTGGGTTCGTAGCTTTGGAGATTGCTACAGGAAGAATGTCAAGAACTTGCATTGATCAAGATGAATCTTACAAAGGATTAGTAGAATCAGTTTGGGATCTGTATGAAAGTGGGCAATTGCTAGTGGGGATGGATGAGAAATTGCAATCTAAGTATGATGAAAAAGAGGCTGAGTGTTTGATGATGGTTGGATTATGGAGTTCTTATCCTGACCCTAATCTTAGACCTTCCATGAAACAAGCAATTCAAGTTCTTAATTTTGAGAGAAATATGCCAAATCTTCCAAGTAAAATGCCACTTGCTTTTTATAACGCTCCATCCACATCAATCAACTCAAACCAACCTTCCAAACATTACTCCAAGCCTTGGTCACATGTGTCTTCCTTGAAAACCCAATGA 1944 39.2 MLIHLFLFLCFTLSVNPISFKIDQFLWNEDRIAFQGDAFLSDRGIQFSHSVYHCQVGQAIYRDIVPIWDIEKGKLTDFSTHFAFSIDTQNNKTYGSGIVFFLAPVGFQIPINSAAGFFGLYNKTYMNSSQNQILHVEFDSHADPDWDPSYQHVGININSVTSSILTPLNVSFHSGDIADVWISYNSFTKNFTVSWKWKSTSNSFEDTTLSYKIDLTTILPQWAVVGFAGATGTNFERHTLFSWEFNSSLDIKQTSKNNGNIVKIVVGVTVSVGVFIIIVIATIFVVMCKLKQRKKTGEEVNLTSMNQDLEREAGPRRFSSKLLGMATNNFSNERKLGEGGFGAVYRGYIPDIDLTVAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMPNGSLDSHLFGKRTPLAWAVRYKIALGLASALLYLHEEWEQCVVHRDIKPSNVMLDSNFNAKLGDFGLARLMDHELGGQTTRLAGTFGYLAPEYVTTGRASKESDIFSFGFVALEIATGRMSRTCIDQDESYKGLVESVWDLYESGQLLVGMDEKLQSKYDEKEAECLMMVGLWSSYPDPNLRPSMKQAIQVLNFERNMPNLPSKMPLAFYNAPSTSINSNQPSKHYSKPWSHVSSLKTQ 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31779062 31781005 + ClG42_09g0175900.10 Clacu09g1759 258067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1759 647 SMART serkin_6 330 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1759 647 PANTHER - 35 610 IPR050528 GO:0005886(PANTHER)
Clacu09g1759 647 Gene3D Transferase(Phosphotransferase) domain 1 407 622 - -
Clacu09g1759 647 MobiDBLite consensus disorder prediction 626 647 - -
Clacu09g1759 647 FunFam L-type lectin-domain containing receptor kinase IX.1 315 406 - -
Clacu09g1759 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1759 647 Gene3D Phosphorylase Kinase; domain 1 315 406 - -
Clacu09g1759 647 Pfam Legume lectin domain 19 258 IPR001220 GO:0030246(InterPro)
Clacu09g1759 647 ProSiteProfiles Protein kinase domain profile. 330 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1759 647 Gene3D - 16 272 - -
Clacu09g1759 647 ProSitePatterns Protein kinases ATP-binding region signature. 336 360 IPR017441 GO:0005524(InterPro)
Clacu09g1759 647 SUPERFAMILY Protein kinase-like (PK-like) 314 631 IPR011009 -
Clacu09g1759 647 CDD lectin_legume_LecRK_Arcelin_ConA 18 249 IPR001220 GO:0030246(InterPro)
Clacu09g1759 647 Pfam Protein kinase domain 331 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1759 647 FunFam Lectin-domain containing receptor kinase A4.3 407 620 - -
Clacu09g1759 647 SUPERFAMILY Concanavalin A-like lectins/glucanases 17 250 IPR013320 -
Clacu09g1759 647 CDD STKc_IRAK 336 601 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0844 Clacu-Chr3:9903251 Clacu09g1759 Clacu-Chr9:31779062 7.40E-19 dispersed
Clacu09g1759 Clacu-Chr9:31779062 Clacu10g0831 Clacu-Chr10:15002595 2.60E-162 dispersed
Clacu09g1758 Clacu-Chr9:31774010 Clacu09g1759 Clacu-Chr9:31779062 4.80E-46 tandem
Clacu09g1759 Clacu-Chr9:31779062 Clacu09g1760 Clacu-Chr9:31788276 5.50E-266 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73840 PF00069 Pkinase 2.30E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1759 - - - 0.0