Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1760 ATGGCTACTTCCTCCTATGTCTTTCCATTGTCAAGTCATCTCCTTTTCCTTCTCCTTCTTCTTTCCTTTCTTCCTCCCTCCATTCACTCAATTTCTTTCCAAATAGATCGGTTCAAGACCAATGAAAGTGATGCACTTTACCAAGGAGATGCCCTTCCTTCAGTTGGATCAGTTGAATTCAACGATGTTAATTATCTTTGTAGAGTTGGTTGGATTATCTACAAAGACATTGTGCCAATTTGGGACTCTAAAACAGGAAAAACCACTGATTTTACAACCCACTTCACCTTCTTAATAGATACCCAAAATGTTCAAAACTATGGCCATGGAATAGCTTTCTTTCTAGCTCCAATTGGGTTCCAAATCCCTCCAAACTCAGCTGGTGGCTTTCTTGGCCTTTTCAACACCACAAATAGTGATTCAACCATCAACCAAATTGTCCATGTTGAATTTGATTCTTTCTCCAATCAAGAATGGGATCCTCCATATGAACATGTGGGCATAAATGTTAACTCCATTGCTTCTTCTAATTACACTCGTTGGAATGCTAGTTTACATAGTGGAGATATTGCTGATGTGTGGATCTCCTATAATTCAACTACAAAAAACTTTAGTGTTTGGTGGAAATACCAAAGTGGGTCAAATTCTTCTGAGAATACAACTCTAAGTTACCAAATTGATCTCATGAAGGTTCTTCCTCAATGGGCTACAATAGGATTTTCAGCTGCAACTGGAATGTATGTAGAGAGACATACATTATTTTCATGGGAATTCAACTCCACCTTGGATATAAACAAAGCAAGTGAAGATAATGGGAATAAAGTTAATGTAATTGTGGGTGTGACTGTTTCAATAGGAGTTTCAATTCTCATAGCAATTATAGCCTTTGTAGTACTTTGGAGATTGAAACAAAAGAAAAGAAAATCAGAAGAAGAAAAGTCTGAGGAGGTAAACTTGACATCCATTAATGATGATTTGGAAAGAGGGGCTGGACCCAGAAGGTTTTCTCATAAGCTACTAGCCATGGCTACCAACAACTTCTCCAATGAAAGGAAGCTTGGTCAAGGAGGATTTGGAGCAGTGTACAGAGGGTACATACCAGACATAGATTTGACAGTGGCTGTGAAGAAAATCTCAAGGGGTTCAAGACAGGGGAGAAAAGAGTACATAACTGAAGTGAAGATCATTAGTCGGCTTCGCCATCGAAACTTGGTGCAACTCATTGGTTGGTGTCATGATAAGGGTGAGTTCTTGTTGGTTTATGAATTCATGCCAAATGGTAGTCTTGATTCTCATCTCTTTGGTAAGAGAACCCCTCTTGCTTGGGCTGTGAGATATAAGATTGCTTTAGGTTTAGCTTCTGCATTGCTATATCTCCATGAAGAATGGGAACAATGTGTGGTTCATAGAGACATTAAATCAAGTAATGTGATGTTGGATTCAAACTTCAATGTCAAGCTTGGGGATTTTGGGTTAGCTAGATTAATGGACCATGAGTTGGGAGCTCAAACAACTGGGTTGGTTGGAACTTTGGGCTACTTAGCTCCAGAATATATAAGCACAGGCAGAGCCAGTAAAGAATCTGATGTGTTTAGTTTTGGGGTTGTTGCTTTGGAGATTGCTACTGGAAGAATGTCAAGAACCTCCATGGATACAGAATCTCATAAGGATTTGGTGGAGTGGGTTTGGGATCTTTATGGTAGTGGACAATTGATTGATGGCATGGATGAGAAATTGATGAAGTCTGATTATGACCAAAAACAAATAGAGTGTTTGATGCTTGTTGGACTTTGGAGTGCTTATCCTGACCCTAATTTAAGACCTTCAATAAGACAAGCAATTCAAGTTCTTAATTTTGAGACAACAATGCCAAATCTTCCAAGTAAAATGCCTGTTGCTGTGTATCATGCTCCTTCCACATCAATGAGCTCAAATGAACCAACAATTACTGCAAGTCTTGATGTGGGTCGTTGA 1974 39.11 MATSSYVFPLSSHLLFLLLLLSFLPPSIHSISFQIDRFKTNESDALYQGDALPSVGSVEFNDVNYLCRVGWIIYKDIVPIWDSKTGKTTDFTTHFTFLIDTQNVQNYGHGIAFFLAPIGFQIPPNSAGGFLGLFNTTNSDSTINQIVHVEFDSFSNQEWDPPYEHVGINVNSIASSNYTRWNASLHSGDIADVWISYNSTTKNFSVWWKYQSGSNSSENTTLSYQIDLMKVLPQWATIGFSAATGMYVERHTLFSWEFNSTLDINKASEDNGNKVNVIVGVTVSIGVSILIAIIAFVVLWRLKQKKRKSEEEKSEEVNLTSINDDLERGAGPRRFSHKLLAMATNNFSNERKLGQGGFGAVYRGYIPDIDLTVAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMPNGSLDSHLFGKRTPLAWAVRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIATGRMSRTSMDTESHKDLVEWVWDLYGSGQLIDGMDEKLMKSDYDQKQIECLMLVGLWSAYPDPNLRPSIRQAIQVLNFETTMPNLPSKMPVAVYHAPSTSMSSNEPTITASLDVGR 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31788276 31790249 - ClG42_09g0176000.10 Clacu09g1760 258068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1760 657 ProSiteProfiles Protein kinase domain profile. 347 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1760 657 FunFam L-type lectin-domain containing receptor kinase IX.1 332 423 - -
Clacu09g1760 657 FunFam L-type lectin-domain containing receptor kinase IX.1 29 271 - -
Clacu09g1760 657 CDD STKc_IRAK 353 618 - -
Clacu09g1760 657 Gene3D - 28 287 - -
Clacu09g1760 657 SUPERFAMILY Protein kinase-like (PK-like) 327 620 IPR011009 -
Clacu09g1760 657 Pfam Legume lectin domain 31 270 IPR001220 GO:0030246(InterPro)
Clacu09g1760 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 263 IPR013320 -
Clacu09g1760 657 Gene3D Transferase(Phosphotransferase) domain 1 424 639 - -
Clacu09g1760 657 PANTHER - 57 627 IPR050528 GO:0005886(PANTHER)
Clacu09g1760 657 Pfam Protein kinase domain 348 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1760 657 ProSitePatterns Protein kinases ATP-binding region signature. 353 377 IPR017441 GO:0005524(InterPro)
Clacu09g1760 657 FunFam Lectin-domain containing receptor kinase A4.3 424 637 - -
Clacu09g1760 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1760 657 SMART serkin_6 347 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1760 657 CDD lectin_legume_LecRK_Arcelin_ConA 31 262 IPR001220 GO:0030246(InterPro)
Clacu09g1760 657 Gene3D Phosphorylase Kinase; domain 1 332 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1755 Clacu-Chr9:31745561 Clacu09g1760 Clacu-Chr9:31788276 6.3e-310 dispersed
Clacu09g1758 Clacu-Chr9:31774010 Clacu09g1760 Clacu-Chr9:31788276 2.80E-54 dispersed
Clacu09g1760 Clacu-Chr9:31788276 Clacu10g0831 Clacu-Chr10:15002595 2.80E-180 dispersed
Clacu09g1759 Clacu-Chr9:31779062 Clacu09g1760 Clacu-Chr9:31788276 5.50E-266 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73841 PF00069 Pkinase 4.80E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1760 - - - 0.0