Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1814 ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGAAAAGCCGATAACAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATGCTTCTGAAATAAACTACCAATCAGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCCTCCAATCAGTCTATGAATTCCGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAATTAAAAAGAGTGGAGGGAAAAAGCGGAAAATTGAGTCTAGTGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGATATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTTGAGCCCGGTAATCCTTTCTGCAGAGTTGTCTTGCGACCATCCTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTCTGCCTGGAAAATAATCTAGGGGAGGGTGACGTTTGTGTGTTTGAGCTTCTTAGAATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAACCCCCAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAACTGATCAGAAATTAA 1239 41.49 MTDFSAFRTGGFKRKMPRPHFHKLVLTSTIQARKLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMATPNPASMMNPPPLRSVSHIKLIRN 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32836999 32839990 + ClG42_09g0181400.10 Clacu09g1814 258122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1814 412 SUPERFAMILY DNA-binding pseudobarrel domain 281 380 IPR015300 -
Clacu09g1814 412 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Clacu09g1814 412 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Clacu09g1814 412 Gene3D - 263 383 IPR015300 -
Clacu09g1814 412 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677(InterPro)
Clacu09g1814 412 CDD B3_DNA 284 379 IPR003340 GO:0003677(InterPro)
Clacu09g1814 412 Pfam B3 DNA binding domain 21 111 IPR003340 GO:0003677(InterPro)
Clacu09g1814 412 Pfam B3 DNA binding domain 288 379 IPR003340 GO:0003677(InterPro)
Clacu09g1814 412 PANTHER B3 DOMAIN-CONTAINING 17 366 IPR050655 -
Clacu09g1814 412 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Clacu09g1814 412 SMART B3_2 286 381 IPR003340 GO:0003677(InterPro)
Clacu09g1814 412 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Clacu09g1814 412 Gene3D - 13 114 IPR015300 -
Clacu09g1814 412 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1347 Clacu-Chr2:26510436 Clacu09g1814 Clacu-Chr9:32836999 1.50E-23 dispersed
Clacu02g1348 Clacu-Chr2:26521452 Clacu09g1814 Clacu-Chr9:32836999 8.90E-28 dispersed
Clacu09g1814 Clacu-Chr9:32836999 Clacu09g1816 Clacu-Chr9:32855489 7.30E-46 proximal
Clacu07g1721 Clacu-Chr7:31948846 Clacu09g1814 Clacu-Chr9:32836999 5.50E-29 transposed
Clacu01g1715 Clacu-Chr1:29332240 Clacu09g1814 Clacu-Chr9:32836999 1.30E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48375 PF02362 B3 5.70E-18 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1814 - - - 0.0