Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1824 ATGCCGACCGCCCCTTCTCCTTCTCCTTCTCCTTCTCCTACCCCTTCCTCCTCCTCCTCCACCGCCGTCAATTTCCCTCCCCCCGCCTCCTTGCAGTCGGCAAAGCTCCCCGTCGATTTCAGCCCCCCTCTAATCGCCATGGTTGTCGTCATCGCTACCGCCTTCCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCATCTCATCCCTCCCATTCTCCACCTCCTCCGTCTCCACCGCCGTCGCTGGCGCCGGTGGCGGCGCCGACGTCGACGCGCCCGATCTTACCTTCCGTCTTCCTCTGGAGGCGACCTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTACAGATGGCTTCCACGTTTTCTCTCCATACGGTCTCGACGAATCCGTAATCAAGACGATTCCGCTTTCCGTTTACACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTCGAGTTTGAAGACGATGATTACGTCAGAACGCTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCTCTTTGTCGCGCGGTGGTTTTCAGGCCGGAATCTCCATTTACACCGGTTATGGCGGCTAGAATCCGGCCAAGCCTCGATGATACGATCTTACGGAGTATCGTATTAGAGCCGCTCGTGGAAGGTCCTATTCCTAATCTAGATTCTTATCACGCGACGGAATCGGAAATTACTCCTTGCGTTGATGAACCACGGAATAGCAATTCCGTGGAGGATCAAATGAACGGACAAGATTTCTTGCTGAAGCGATCGTATTCATTTGGATTCGAACGGAGCTTAGCGTCGGAGAGAATGATTCTGGAACCAGCGACCACGTCTCCTTGGAGGTACCGTCGTGGAAGCTTCTGGAGCAAACGTCCGTCGCCGTTCGGATCTCTACCGAAGGCAAGAGTGTTTTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGACGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGTGTAGGCGGAGGCTCATCGAGACGGAGTAAGTCAATGACGAGTCCGATGTTTCTCCGATCGTCGGTAACCGGCGGAGGAACAGCGGCGTTCTCGTCGAGCCGGTTGAGATGCGGAGATCCGGAGGCGTTATTATCACCGGAGAGATTCAACCAAAGATGA 1218 54.11 MPTAPSPSPSPSPTPSSSSSTAVNFPPPASLQSAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDGFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLVEGPIPNLDSYHATESEITPCVDEPRNSNSVEDQMNGQDFLLKRSYSFGFERSLASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGTAAFSSSRLRCGDPEALLSPERFNQR 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32980686 32981903 - ClG42_09g0182400.10 Clacu09g1824 258132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1824 405 SMART ring_2 151 192 IPR001841 -
Clacu09g1824 405 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Clacu09g1824 405 Pfam Ring finger domain 150 193 IPR001841 -
Clacu09g1824 405 SUPERFAMILY RING/U-box 147 199 - -
Clacu09g1824 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
Clacu09g1824 405 PANTHER RING-H2 FINGER PROTEIN ATL16 16 216 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Clacu09g1824 405 FunFam RING-H2 finger protein ATL65 122 197 - -
Clacu09g1824 405 MobiDBLite consensus disorder prediction 352 377 - -
Clacu09g1824 405 CDD RING-H2_EL5-like 150 193 - -
Clacu09g1824 405 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1824 Clacu-Chr9:32980686 Clacu09g1926 Clacu-Chr9:34147911 1.40E-17 dispersed
Clacu09g1824 Clacu-Chr9:32980686 Clacu05g0490 Clacu-Chr5:4100251 1.80E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1824 - - - 0.0