Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1856 ATGGGAGGGGCTTGTGGGTATGGTAATTTGTATAGCCAAGGCTATGGAACTAACACTGCGGCGCTGAGCACAGCGTTGTTTGATAATGGACTCAGCTGTGGCGCTTGCTTTGAGCTACGGTGTGTGAACGACCCCCAATGGTGTCTTCCAGGCACCATCGTTGTCACTGCCACTAATTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCATCATTTTGACCTCTCTCAGCCTATCTTCCAACACATTGCCCAATATCGCGCCGGAATTGTCCCCGTCGCTTATCGCAGAGTAAGGTGCAGGAGAAGTGGGGGAATAAGATTCACAATCAATGGGCATTCATATTTCAATTTGGTGTTGGTGACTAACGTGGGGGGCGCCGGAGATGTACATGCCATGGCGATTAAGGGTTCGAAAACCAGATGGCAACCGATGTCTAGAAATTGGGGGCAAAATTGGCAATCCAACTCTTATCTGAACGGACAGAGTCTATCGTTTTTGGTCACAGCCAGCGACGGACGGCGAGTGCTCTCCTACAACGTGGCTCCCTCCGGCTGGTCCTTTGGACAGACTTATGTCGGCGGACAATTTCGTTATTAA 603 51.58 MGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDVHAMAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRRVLSYNVAPSGWSFGQTYVGGQFRY 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33317282 33318040 + ClG42_09g0185600.10 Clacu09g1856 258164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1856 200 Gene3D - 1 102 IPR036908 -
Clacu09g1856 200 CDD DPBB_EXPA_N 1 101 - -
Clacu09g1856 200 PRINTS Expansin signature 53 63 IPR002963 GO:0009664(InterPro)
Clacu09g1856 200 PRINTS Expansin signature 117 138 IPR002963 GO:0009664(InterPro)
Clacu09g1856 200 PRINTS Expansin signature 14 28 IPR002963 GO:0009664(InterPro)
Clacu09g1856 200 PRINTS Expansin signature 41 52 IPR002963 GO:0009664(InterPro)
Clacu09g1856 200 PRINTS Expansin signature 152 173 IPR002963 GO:0009664(InterPro)
Clacu09g1856 200 PRINTS Expansin signature 64 81 IPR002963 GO:0009664(InterPro)
Clacu09g1856 200 PRINTS Expansin signature 81 94 IPR002963 GO:0009664(InterPro)
Clacu09g1856 200 PRINTS Expansin signature 105 117 IPR002963 GO:0009664(InterPro)
Clacu09g1856 200 PRINTS Expansin signature 181 197 IPR002963 GO:0009664(InterPro)
Clacu09g1856 200 SUPERFAMILY Barwin-like endoglucanases 1 124 IPR036908 -
Clacu09g1856 200 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576(InterPro)
Clacu09g1856 200 PRINTS Expansin/Lol pI family signature 181 195 IPR007118 GO:0005576(InterPro)
Clacu09g1856 200 PRINTS Expansin/Lol pI family signature 143 157 IPR007118 GO:0005576(InterPro)
Clacu09g1856 200 PRINTS Expansin/Lol pI family signature 89 105 IPR007118 GO:0005576(InterPro)
Clacu09g1856 200 PRINTS Expansin/Lol pI family signature 1 19 IPR007118 GO:0005576(InterPro)
Clacu09g1856 200 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 2 106 IPR007112 -
Clacu09g1856 200 Pfam Expansin C-terminal domain 107 184 IPR007117 -
Clacu09g1856 200 SMART dpbb_1 19 96 IPR007112 -
Clacu09g1856 200 Gene3D - 106 198 IPR036749 -
Clacu09g1856 200 SUPERFAMILY PHL pollen allergen 103 194 IPR036749 -
Clacu09g1856 200 PANTHER EXPANSIN-A15 1 198 IPR002963 GO:0009664(InterPro)
Clacu09g1856 200 FunFam Expansin 106 198 - -
Clacu09g1856 200 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 116 195 IPR007117 -
Clacu09g1856 200 Pfam Lytic transglycolase 19 96 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1856 Clacu-Chr9:33317282 Clacu11g0714 Clacu-Chr11:7020692 8.60E-93 dispersed
Clacu04g1275 Clacu-Chr4:26817804 Clacu09g1856 Clacu-Chr9:33317282 5.70E-83 wgd
Clacu05g2616 Clacu-Chr5:33929896 Clacu09g1856 Clacu-Chr9:33317282 3.10E-99 wgd
Clacu06g1720 Clacu-Chr6:27843631 Clacu09g1856 Clacu-Chr9:33317282 8.00E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1856 K20628 - csv:101220358 419.468