Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1867 ATGGATTTAGCCGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAATGGTGTTCTCAAGCGCCACCATCACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCTTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 906 51.32 MDLAAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33415414 33416319 + ClG42_09g0186700.10 Clacu09g1867 258175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1867 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 257 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu09g1867 301 MobiDBLite consensus disorder prediction 137 151 - -
Clacu09g1867 301 FunFam Zinc-finger homeodomain protein 2 186 260 - -
Clacu09g1867 301 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Clacu09g1867 301 MobiDBLite consensus disorder prediction 1 39 - -
Clacu09g1867 301 Gene3D - 186 260 - -
Clacu09g1867 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Clacu09g1867 301 MobiDBLite consensus disorder prediction 7 39 - -
Clacu09g1867 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Clacu09g1867 301 MobiDBLite consensus disorder prediction 131 160 - -
Clacu09g1867 301 SUPERFAMILY Homeodomain-like 187 260 IPR009057 -
Clacu09g1867 301 NCBIfam homeobox domain, ZF-HD class 199 256 IPR006455 -
Clacu09g1867 301 MobiDBLite consensus disorder prediction 275 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1867 Clacu-Chr9:33415414 Clacu10g0865 Clacu-Chr10:17950168 1.10E-35 dispersed
Clacu09g1867 Clacu-Chr9:33415414 Clacu09g1868 Clacu-Chr9:33427554 7.80E-13 tandem
Clacu10g1493 Clacu-Chr10:28111303 Clacu09g1867 Clacu-Chr9:33415414 1.70E-81 wgd
Clacu04g1288 Clacu-Chr4:26895699 Clacu09g1867 Clacu-Chr9:33415414 1.30E-12 wgd
Clacu05g2632 Clacu-Chr5:34000212 Clacu09g1867 Clacu-Chr9:33415414 1.10E-42 wgd
Clacu06g1730 Clacu-Chr6:27903280 Clacu09g1867 Clacu-Chr9:33415414 6.30E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48380 PF04770 ZF-HD_dimer 9.90E-29 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1867 - - - 0.0