Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1868 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGGTACGCAGTTGATGGGTGTCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCGGCCTGCGGTTGCCACCGGAATTTCCATAGAAGGCAAGTTGGAACTGAGGTAGTTTGCGATTGCTCTTCATCACCCTCAAATGGAACTTGA 291 52.58 MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33427554 33427844 + ClG42_09g0186800.10 Clacu09g1868 258176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1868 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Clacu09g1868 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Clacu09g1868 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 79 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu09g1868 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1288 Clacu-Chr4:26895699 Clacu09g1868 Clacu-Chr9:33427554 2.70E-26 dispersed
Clacu06g1730 Clacu-Chr6:27903280 Clacu09g1868 Clacu-Chr9:33427554 1.40E-26 dispersed
Clacu09g1868 Clacu-Chr9:33427554 Clacu11g0158 Clacu-Chr11:1184217 3.70E-17 dispersed
Clacu09g1867 Clacu-Chr9:33415414 Clacu09g1868 Clacu-Chr9:33427554 7.80E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48381 PF04770 ZF-HD_dimer 3.30E-30 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1868 - - - 0.0