Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1868 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGGTACGCAGTTGATGGGTGTCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCGGCCTGCGGTTGCCACCGGAATTTCCATAGAAGGCAAGTTGGAACTGAGGTAGTTTGCGATTGCTCTTCATCACCCTCAAATGGAACTTGA 291 52.58 MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33427554 33427844 + ClG42_09g0186800.10 Clacu09g1868 258176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1868 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Clacu09g1868 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Clacu09g1868 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 79 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu09g1868 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1868 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1288 Clacu-Chr4:26895699 Clacu09g1868 Clacu-Chr9:33427554 2.70E-26 dispersed
Clacu06g1730 Clacu-Chr6:27903280 Clacu09g1868 Clacu-Chr9:33427554 1.40E-26 dispersed
Clacu09g1868 Clacu-Chr9:33427554 Clacu11g0158 Clacu-Chr11:1184217 3.70E-17 dispersed
Clacu09g1867 Clacu-Chr9:33415414 Clacu09g1868 Clacu-Chr9:33427554 7.80E-13 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g1868 . 1 95 Zinc finger-homeobox gene family AT3G28917 79.8 3.1e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000730 3 3 2 3 4 3 2 3 3 2 3 3 4 3 3 5 3 6 4 3 3 3 3 1 3 3 3 6 3 1 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48381 PF04770 ZF-HD_dimer 3.30E-30 No_clan Clacu TF