Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g1879 | ATGGCTTCCCCTCACCATTCCCATAGCTTCATGTTCCAATCCCGCCCCGCCGATCACCACGAATACGTCCCCTCCGCTTCCTTCAACGCCATTCCCTCCTGCCCTCCTCACCTCTACTTTCACGATGGAGTGGTTCCAGTGATGATGAAGAGATCGATGTCGTTTTCGGGAGTCGAAAACGGGTGCGAGGAAGTGAATGGCGACGAGGGGTTATCAGACGATGGATTGGCATTGGGAGAGAAGAAGAAGCGATTAAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGTTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTAGCCAAAGCTTTGGGGTTGCAGCCAAGACAGATTGCTATTTGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAGTTGGAGAGAGATTATGAAGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGCTATTAGCATTAAAAACCAAAGACTCCGGCGAGGCAGCGGGGGGCGGCGCCACCATGAACCTAAAGAAAGAAAACGAACGCTGTTGGAGCAGCGACAACAGTTGCGACATTAATCTCGACATCTCAAAGACACAAGCACCAATAAACGGCAGCGGCGGTGGTGGCGGAGGTAGAGCATGTTCTCAACCAGGAATAATCAAAGATCTTTTCCCATCGGCGGCGTTCCGATCCGCCGCCATAACGCAGCTGCTTCAACACGGGTCGTCCAGATCAACGGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGCATTGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA | 915 | 48.52 | MASPHHSHSFMFQSRPADHHEYVPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGVENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAAGGGATMNLKKENERCWSSDNSCDINLDISKTQAPINGSGGGGGGRACSQPGIIKDLFPSAAFRSAAITQLLQHGSSRSTVDHPQVIQEESFSQMFNGIEEQQQTAAAAGFWPWSSDQNSHFH | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 33634933 | 33637751 | + | ClG42_09g0187900.10 | Clacu09g1879 | 258187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g1879 | 304 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 58 | 214 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Clacu09g1879 | 304 | Gene3D | - | 77 | 144 | - | - | |
Clacu09g1879 | 304 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 73 | 140 | - | - | |
Clacu09g1879 | 304 | ProSitePatterns | 'Homeobox' domain signature. | 111 | 134 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Clacu09g1879 | 304 | PRINTS | Lambda-repressor HTH signature | 116 | 132 | IPR000047 | GO:0003677(InterPro) | |
Clacu09g1879 | 304 | PRINTS | Lambda-repressor HTH signature | 107 | 116 | IPR000047 | GO:0003677(InterPro) | |
Clacu09g1879 | 304 | Pfam | Homeobox associated leucine zipper | 136 | 176 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu09g1879 | 304 | ProSiteProfiles | 'Homeobox' domain profile. | 80 | 136 | IPR001356 | GO:0003677(InterPro) | |
Clacu09g1879 | 304 | SUPERFAMILY | Homeodomain-like | 79 | 138 | IPR009057 | - | |
Clacu09g1879 | 304 | Coils | Coil | 128 | 169 | - | - | |
Clacu09g1879 | 304 | SMART | HOX_1 | 79 | 140 | IPR001356 | GO:0003677(InterPro) | |
Clacu09g1879 | 304 | Pfam | Homeodomain | 81 | 134 | IPR001356 | GO:0003677(InterPro) | |
Clacu09g1879 | 304 | CDD | homeodomain | 81 | 137 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1926 | Clacu-Chr1:31348363 | Clacu09g1879 | Clacu-Chr9:33634933 | 3.30E-25 | dispersed | |
Clacu09g1879 | Clacu-Chr9:33634933 | Clacu10g0858 | Clacu-Chr10:17583141 | 3.60E-26 | dispersed | |
Clacu01g1513 | Clacu-Chr1:27228531 | Clacu09g1879 | Clacu-Chr9:33634933 | 2.00E-25 | wgd | |
Clacu05g2649 | Clacu-Chr5:34142026 | Clacu09g1879 | Clacu-Chr9:33634933 | 1.20E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48384 | PF00046 | Homeodomain | 2.90E-15 | CL0123 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g1879 | K09338 | - | csv:101212093 | 565.459 |