Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1879 ATGGCTTCCCCTCACCATTCCCATAGCTTCATGTTCCAATCCCGCCCCGCCGATCACCACGAATACGTCCCCTCCGCTTCCTTCAACGCCATTCCCTCCTGCCCTCCTCACCTCTACTTTCACGATGGAGTGGTTCCAGTGATGATGAAGAGATCGATGTCGTTTTCGGGAGTCGAAAACGGGTGCGAGGAAGTGAATGGCGACGAGGGGTTATCAGACGATGGATTGGCATTGGGAGAGAAGAAGAAGCGATTAAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGTTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTAGCCAAAGCTTTGGGGTTGCAGCCAAGACAGATTGCTATTTGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAGTTGGAGAGAGATTATGAAGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGCTATTAGCATTAAAAACCAAAGACTCCGGCGAGGCAGCGGGGGGCGGCGCCACCATGAACCTAAAGAAAGAAAACGAACGCTGTTGGAGCAGCGACAACAGTTGCGACATTAATCTCGACATCTCAAAGACACAAGCACCAATAAACGGCAGCGGCGGTGGTGGCGGAGGTAGAGCATGTTCTCAACCAGGAATAATCAAAGATCTTTTCCCATCGGCGGCGTTCCGATCCGCCGCCATAACGCAGCTGCTTCAACACGGGTCGTCCAGATCAACGGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGCATTGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 915 48.52 MASPHHSHSFMFQSRPADHHEYVPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGVENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAAGGGATMNLKKENERCWSSDNSCDINLDISKTQAPINGSGGGGGGRACSQPGIIKDLFPSAAFRSAAITQLLQHGSSRSTVDHPQVIQEESFSQMFNGIEEQQQTAAAAGFWPWSSDQNSHFH 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33634933 33637751 + ClG42_09g0187900.10 Clacu09g1879 258187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1879 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 214 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Clacu09g1879 304 Gene3D - 77 144 - -
Clacu09g1879 304 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Clacu09g1879 304 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu09g1879 304 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677(InterPro)
Clacu09g1879 304 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677(InterPro)
Clacu09g1879 304 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g1879 304 ProSiteProfiles 'Homeobox' domain profile. 80 136 IPR001356 GO:0003677(InterPro)
Clacu09g1879 304 SUPERFAMILY Homeodomain-like 79 138 IPR009057 -
Clacu09g1879 304 Coils Coil 128 169 - -
Clacu09g1879 304 SMART HOX_1 79 140 IPR001356 GO:0003677(InterPro)
Clacu09g1879 304 Pfam Homeodomain 81 134 IPR001356 GO:0003677(InterPro)
Clacu09g1879 304 CDD homeodomain 81 137 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1926 Clacu-Chr1:31348363 Clacu09g1879 Clacu-Chr9:33634933 3.30E-25 dispersed
Clacu09g1879 Clacu-Chr9:33634933 Clacu10g0858 Clacu-Chr10:17583141 3.60E-26 dispersed
Clacu01g1513 Clacu-Chr1:27228531 Clacu09g1879 Clacu-Chr9:33634933 2.00E-25 wgd
Clacu05g2649 Clacu-Chr5:34142026 Clacu09g1879 Clacu-Chr9:33634933 1.20E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48384 PF00046 Homeodomain 2.90E-15 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1879 K09338 - csv:101212093 565.459