Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1881 ATGGGTTTGGCACCTAATGATTCCAAGCTCGAGACATGGATTGAGGGGAAGTCAAAAACAGCTAGCGAGAAGAAGAAGAAGAAGGAGAATGAGTTGGAGGAGGAGACTGGATGTTGGGTTAAGTTGAAGTTCATAGGGAGTTGCATTCCTTCTAGATCAAAGGTTGATAGTTCTCTGAGTGGATCAAAGGTCGATAGCTTCATCAGTGGCACCAGTACTCATTGCGATAGTAAACCTAAACTTGACGAAAAAAGAGATATTCTGGTTACTGCATTGGGGTCATCAGCGACAACTGATAATGCTGAAAGTAGTTCGTCCACGCCCAAGCTCAGTGCAGAGCTGAAGGTTGCTTCTCGGCTTCGTAAGTTCACTTTTAATGAGCTTAAGTTAGCCACGAGAAATTTCCGACCTGAGAGCCTTCTTGGCGAGGGAGGTTTTGGTTGTGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCTGGAACTGGGCTTACAGTTGCAGTCAAGACTCTTAATCATGACGGCCTACAAGGTCACAAGGAGTGGATGGCTGAAGTTAACTTCCTTGGTGACCTCAACCATTCTAATCTTGTAAGATTGATTGGTTGCTGCATTGAAGATGATCAAAGGTTATTAGTTTATGAGTTCATGCCTCGTGGAAGTTTGGAGAATCACCTCTTCAGAAGGCCCTTGCCACTTCCTTGGTCTATTAGATTGAAAATTGCGCTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTGATATATCGTGATTTTAAAACGTCTAATATTTTATTAGATGCGGACTACAATGCTAAACTCTCAGATTTTGGACTCGCAAAAGATGGTCCTGAGGGTGACAAAACTCATGTTTCAACTCGGGTTATGGGAACCTATGGTTATGCAGCTCCAGAATATGTGATGACTGGGCATTTGACATCAAAAAGCGATGTCTACAGTTTTGGAGTTGTCTTGCTTGAAATGCTAACCGGTCGAAGATCGATGGATAAAAATAGACCGAATGGGGAGCACAACCTTGTTGAATGGGCTAGACCCTTGCTTGGAGACAAGAGGAAGTTCTACCGGCTGATAGATCCTCGCCTTGAATGTCACTTCTCGATCAAAGGTGCACAAAAAGCTGCCGAGCTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGCCAGACCTATGATGAGTGAAGTTGTTGAAATTTTAAAACCTTTGCCAAACCTCAAGGACATGGCAAGTTCTTCCTATTACTTCCAAACCATGCAAACAGACCGTGCCAGGTCCAACCCCAATGCTAAAAGTGTCGTCCGGACTCAGTCGATTCACCGAAACCTGACAGGAGATAACCTTAATAACCAACTCGAGCAAGGGGGGAACCACATCTGA 1425 44.35 MGLAPNDSKLETWIEGKSKTASEKKKKKENELEEETGCWVKLKFIGSCIPSRSKVDSSLSGSKVDSFISGTSTHCDSKPKLDEKRDILVTALGSSATTDNAESSSSTPKLSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRLKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPMMSEVVEILKPLPNLKDMASSSYYFQTMQTDRARSNPNAKSVVRTQSIHRNLTGDNLNNQLEQGGNHI 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33654410 33659605 - ClG42_09g0188100.10 Clacu09g1881 258189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1881 474 MobiDBLite consensus disorder prediction 12 34 - -
Clacu09g1881 474 FunFam Serine/threonine-protein kinase BIK1 102 220 - -
Clacu09g1881 474 MobiDBLite consensus disorder prediction 1 34 - -
Clacu09g1881 474 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524(InterPro)
Clacu09g1881 474 Pfam Protein tyrosine and serine/threonine kinase 139 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1881 474 SUPERFAMILY Protein kinase-like (PK-like) 112 415 IPR011009 -
Clacu09g1881 474 CDD STKc_IRAK 141 418 - -
Clacu09g1881 474 PANTHER OS01G0588500 PROTEIN-RELATED 106 419 IPR050823 -
Clacu09g1881 474 Gene3D Transferase(Phosphotransferase) domain 1 221 439 - -
Clacu09g1881 474 Gene3D Phosphorylase Kinase; domain 1 110 220 - -
Clacu09g1881 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g1881 474 ProSiteProfiles Protein kinase domain profile. 135 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1881 474 FunFam Probable serine/threonine-protein kinase PBL8 221 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1227 Clacu-Chr6:23009561 Clacu09g1881 Clacu-Chr9:33654410 1.70E-139 dispersed
Clacu09g1305 Clacu-Chr9:14263501 Clacu09g1881 Clacu-Chr9:33654410 1.00E-91 dispersed
Clacu09g1881 Clacu-Chr9:33654410 Clacu11g0461 Clacu-Chr11:4379198 6.30E-142 dispersed
Clacu05g2659 Clacu-Chr5:34229052 Clacu09g1881 Clacu-Chr9:33654410 1.80E-192 wgd
Clacu08g1048 Clacu-Chr8:20487691 Clacu09g1881 Clacu-Chr9:33654410 2.10E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73843 PF07714 PK_Tyr_Ser-Thr 3.70E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1881 - - - 0.0