Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1896 ATGAAGATCTCCAACTTCTTCCTCACATGGGTTTCTCTGAATCATCTTCTTCTTTTTCTTCTTCTACTTTGTGTTTCTCCATCTTTTTCTGTAGTTCCAGAAGACGATATAAGGTGTCTTCGAGGGGTTAAGAATGCGCTTGTTGATCCTCTCGGAAGGCTTAGTTCATGGGATTTCAAGAACACATCCGTTGGTCATCTCTGCAACAAATTCGTTGGTCTCTCCTGCTGGAACGACCGTGAGAATCGCATTCTCAGCCTCGAGCTTAAAGATATGAAGCTCTCCGGTTCAATTTCTGAAGACTTACAGTACTGTGTAAGCCTGCAGAAACTGGATCTGTCCGGCAATAGCTTTTCCGGCTCGATCCCGCCGCATATTTGTGAGTGGCTTCCGTATTTGGTTAGCATGGATTTGTCGAACAATCAATTTACCGGTCCTATTCCGGCTGATCTCGCTAGATGTTCTTATTTGAATTCGTTGATTTTGTCTGATAATGAGCTTTCTGGTACAATACCAGTTGAGCTCACGAGTCTGGGTAGACTTAACAAATTTTCTGTTGCGAACAATCAACTCACTGGTACGATTCCTTCATTTTTTGATAAATTTGGGAAGGAGGATTTTGATGGGAACAGTGACTTATGTGGAGGGCCTGTTGGATCTAGTTGTGGTGGGTTGAGCAAGAAGAATCTTGCGATTATTATAGCTGCTGGTGTGTTTGGTGCTGCGGCTTCTCTGTTGTTAGGTTTTGGGTTGTGGTGGTGGTATCATTCTAGAATGAACATGAAGAGGAGAAGGGGATATGGGGATGGGATTAGTGGGGATTGGGCTGATAGATTGAGAGCCTATAAGCTTGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTGAAAGTTAAGTTGGCTGATTTGATGGCTGCTACTAATAATTTCAATTCTGAAAACATCATAGTTTCTTCTAGAACTGGGACTACTTATAGAGCTGTTCTTCCAGATGGCTCTGTGCTTGCTATAAAGCGGCTCAATACTTGCAAGCTCGGTGAGAAGCTGTTTCGAATGGAGATGAACAGGTTAGGATCGATCAGACACCCGAATTTGACACCCCTTTTGGGATTCTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCTAATGGGACTTTGTCCTCTTTGTTACATGGAAATGATGAGATATTGGATTGGCCAACTAGGTTTAGGATTGGTCTGGGTGCAGCTAGAGGTCTTGCTTGGCTTCACCATGGATGCCAACCTCCATTCATGCATCAAAACATATGTTCTAGTGTAATTCTTGTGGATGAAGACTATGATGCTAGGATCATGGATTTTGGATTGGCAAGGTTGATGGCTTCAGATTCTCATGACAGTAGTTTTGTTAATGGAGACTTAGGGGAACTTGGTTACGTTGCCCCTGAGTACCCGAGCACCATGGTTGCATCTTTGAAGGGGGATGTTTATGGATTTGGTGTTGTGCTTTTGGAGTTGATCACTGGCCAAAAACCTCTAGAAGTCACCAAAGCAGAGGAAGGTTATAAGGGTAACTTAGTGGATTGGGTTAATCAGCTGAGTATGTCGGGTCGAATTAAGGATGTTATTGATAAAGATCTTTGTGGGAAAGGAAACGATGAGGAAATCTTACAATTTCTGAAAATTACAATGAACTGCATTGTTTCTCGGCCCAAAGACAGGTGGTCTATGTATCAGGTTTATCAATCAATGAAAACCATGGCTAAAGACTACAGTTTCCCTGAACCAGATGATGAATTCCCACTTTTACTTGGCAAGGGAGATAATGAACCCATGTAG 1827 42.36 MKISNFFLTWVSLNHLLLFLLLLCVSPSFSVVPEDDIRCLRGVKNALVDPLGRLSSWDFKNTSVGHLCNKFVGLSCWNDRENRILSLELKDMKLSGSISEDLQYCVSLQKLDLSGNSFSGSIPPHICEWLPYLVSMDLSNNQFTGPIPADLARCSYLNSLILSDNELSGTIPVELTSLGRLNKFSVANNQLTGTIPSFFDKFGKEDFDGNSDLCGGPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKRRRGYGDGISGDWADRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNSENIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGSIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNDEILDWPTRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDEDYDARIMDFGLARLMASDSHDSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELITGQKPLEVTKAEEGYKGNLVDWVNQLSMSGRIKDVIDKDLCGKGNDEEILQFLKITMNCIVSRPKDRWSMYQVYQSMKTMAKDYSFPEPDDEFPLLLGKGDNEPM 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33848174 33850000 - ClG42_09g0189600.10 Clacu09g1896 258204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1896 608 SUPERFAMILY Protein kinase-like (PK-like) 286 579 IPR011009 -
Clacu09g1896 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 384 602 - -
Clacu09g1896 608 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Clacu09g1896 608 SUPERFAMILY L domain-like 33 209 - -
Clacu09g1896 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 33 223 - -
Clacu09g1896 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 271 383 - -
Clacu09g1896 608 Gene3D Transferase(Phosphotransferase) domain 1 384 594 - -
Clacu09g1896 608 Gene3D Phosphorylase Kinase; domain 1 269 383 - -
Clacu09g1896 608 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 83 582 IPR051564 GO:0016020(PANTHER)
Clacu09g1896 608 Pfam Leucine Rich Repeat 157 178 IPR001611 GO:0005515(InterPro)
Clacu09g1896 608 Pfam Leucine Rich Repeat 107 128 IPR001611 GO:0005515(InterPro)
Clacu09g1896 608 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515(InterPro)
Clacu09g1896 608 Gene3D Ribonuclease Inhibitor 34 224 IPR032675 -
Clacu09g1896 608 ProSiteProfiles Protein kinase domain profile. 309 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g1896 608 Pfam Protein tyrosine and serine/threonine kinase 333 516 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0791 Clacu-Chr9:7103953 Clacu09g1896 Clacu-Chr9:33848174 2.50E-114 dispersed
Clacu09g1896 Clacu-Chr9:33848174 Clacu09g0356 Clacu-Chr9:3073141 1.20E-63 dispersed
Clacu09g1896 Clacu-Chr9:33848174 Clacu01g1655 Clacu-Chr1:28653318 2.40E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73844 PF07714 PK_Tyr_Ser-Thr 1.30E-29 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1896 - - - 0.0