Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g1919 ATGGCTCCTAGCTCTGTTGTTGTCACAATTGAGAAGCATAACACCTTCCCTTTAGTGGAAATCAATGCCTCTGACTCTTTGTTGCTTCCTGAGAAACAGAAGGCTGCTAGTCCCAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCTCACAGAGCTCTGTTTTTCTTCTCATGGCTGGCTATGACTGTCAAGACTGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAATTGTATAGGTTCATTAAGGCTTTTCTTGTTATTTCAATTGCGGGTTTGATCGTTGAAGTTGTTGCCCACTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTTGAGGTTCATGGGCTTGTTCAATGGTTTTATATTTCCTGGCTTTCGTTTCGAGTTGATTACATTGCTCCACTGGTATTAATACTTTCCAAGTTCTGCATTGTTCTGTTCCTGATCCAATCTCTCGATCGTCTTGTTCTCTGTTTTGGTTGCTTTTGGATCAAGTTCAAGAAAATCAAACCCACGATTCAAGACGACGCTTATGATTTGGAAGATGCTTTAACTTTTCCTATGGTTCTTGTTCAAATTCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTAGATGATTCAGATGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGATTGATCCGAACTGGATACAAAGCTGGGAATCTCAAGTCTGCCATGGCTTGTGATTACGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTGACTATCCCTCATTTCAAGGGAAATCCTGAGCTGGGTCTTGTTCAAGCTCGTTGGGCGTTTGTAAACAAGGAAGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGCGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGTGTTTGGAGAACGAAAGCACTTGAGGAATCCGGTGGCTGGCTTGAGCGGACGACTGTGGAAGATATGGATATTGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTATAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTCCCTTCAATCATTACTTCAAAGATATCGATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTCCTTAGAAAACTCATACTTCCATTCTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTTTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTACTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCATATCTCTTGTTTGAGAACACAATGTCTGTCACAAAGTTCAATGCCATGGTTTCGGGGCTATTCCAGCTGGGAAGTTCATACGAATGGGTTGTGACGAAGAAGACAGGACGATCATCTGAATCCGACTTCTTAGCATTCGCAGAGCGAGAGTCGAAAACATCAAATGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGACTCGAGTTGTTGAGTAAATTGAACCAACAAGAGAGGCAAAAGGGTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTTGCTCTTGCTTTTCTGCTGCTCACTGCATCGGCTAGAAGCTTGCTGTCAGAACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGTTTGTCATTCCTGGTGGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 2001 41.83 MAPSSVVVTIEKHNTFPLVEINASDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKTVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLVISIAGLIVEVVAHFKKWNLRMIQPLELEVHGLVQWFYISWLSFRVDYIAPLVLILSKFCIVLFLIQSLDRLVLCFGCFWIKFKKIKPTIQDDAYDLEDALTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKTSNEEKILRRHSESGLELLSKLNQQERQKGSKKKRNKVYRKELALAFLLLTASARSLLSEHGVHFYFLLFQGLSFLVVGLDLIGEQMN 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34098473 34100761 + ClG42_09g0191900.10 Clacu09g1919 258227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g1919 666 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 195 421 IPR029044 -
Clacu09g1919 666 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 118 665 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Clacu09g1919 666 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
Clacu09g1919 666 Pfam Glycosyl transferase family group 2 296 502 IPR001173 -
Clacu09g1919 666 Coils Coil 600 620 - -
Clacu09g1919 666 FunFam probable xyloglucan glycosyltransferase 5 196 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g1919 K20887 - - csv:101208151 1243.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2844 Clacu-Chr5:35687717 Clacu09g1919 Clacu-Chr9:34098473 2.50E-272 dispersed
Clacu09g0840 Clacu-Chr9:7737313 Clacu09g1919 Clacu-Chr9:34098473 1.30E-239 dispersed
Clacu09g1919 Clacu-Chr9:34098473 Clacu10g1921 Clacu-Chr10:32841516 1.10E-107 dispersed
Clacu09g1919 Clacu-Chr9:34098473 Clacu08g0960 Clacu-Chr8:19682349 1.60E-111 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g1814 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.7e-57 217.2
Clacu05g2844 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Clacu09g1919 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.3e-268 919.8
Clacu05g2856 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.2e-262 900.6
Clacu08g1835 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Clacu09g0840 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Clacu05g2844 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Clacu09g1919 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.3e-268 919.8
Clacu05g2856 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.2e-262 900.6
Clacu08g1835 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Clacu09g0840 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Clacu05g2844 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Clacu09g1919 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.3e-268 919.8
Clacu05g2856 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.2e-262 900.6
Clacu08g1835 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Clacu09g0840 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Clacu09g1814 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.7e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33